View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_high_21 (Length: 416)
Name: NF2703_high_21
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 30203157 - 30202823
Alignment:
| Q |
1 |
aggggacatccatcaagaatggcatgcaatccgacattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30203157 |
aggggacatccatcaagaatggcatgcaatccgacattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaa |
30203058 |
T |
|
| Q |
101 |
ttgcgtcatcattcaactcaatgtctttgctgaacatgctgctaaattttagtgatatccaaagtggacaactccgaccaatgacttcaagagaatcctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30203057 |
ttgcgtcatcattcaactcaatgtctttgcagaacatcctgctaaattttagtgatatcaaaagtggacaactccgaccaatgacttcaagagaatcctt |
30202958 |
T |
|
| Q |
201 |
acataggttgttaaatgaaatgtcaagctcctctagcagaggaaatttgtttgcaaccttactaaattgtctgtgcgaaatatttcggcatttcgtaagc |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30202957 |
acataggttgctaaatgaaatgtcaagctcctctagcagaggaaatttgtttgcaaccttactaaattgtctgtgcgaaatatttcggcatttcgtaagc |
30202858 |
T |
|
| Q |
301 |
tgtatgcgacgtagttgacttccactgtaagattt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30202857 |
tgtatgcgacgtagttgacttccactgtaagattt |
30202823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 30231005 - 30230671
Alignment:
| Q |
1 |
aggggacatccatcaagaatggcatgcaatccgacattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaa |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30231005 |
agggggcaaccatcaagaatggcatgcaacccaacattagtaagcaagtttccaaacatcgaaagatggcgtaacttagtcatggtttttgcaatagcaa |
30230906 |
T |
|
| Q |
101 |
ttgcgtcatcattcaactcaatgtctttgctgaacatgctgctaaattttagtgatatccaaagtggacaactccgaccaatgacttcaagagaatcctt |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30230905 |
aagcgtcatcattcagctcgatgtctttgctgaacattctgctaaattttattgatttcaaaagtgggcaactccgaccaatgacttcaagagaatcctt |
30230806 |
T |
|
| Q |
201 |
acataggttgttaaatgaaatgtcaagctcctctagcagaggaaatttgtttgcaaccttactaaattgtctgtgcgaaatatttcggcatttcgtaagc |
300 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||||| |
|
|
| T |
30230805 |
acataggttgctaaatgaaatgtccagctcctctagcagtggaaatttgtttgcaacttcactaaattgtttgtgtaaaatatttcggcattttgtaagt |
30230706 |
T |
|
| Q |
301 |
tgtatgcgacgtagttgacttccactgtaagattt |
335 |
Q |
| |
|
|| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
30230705 |
tggatgcgtcgtaggtgacttccactgtaagattt |
30230671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 30224009 - 30223675
Alignment:
| Q |
1 |
aggggacatccatcaagaatggcatgcaatccgacattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaa |
100 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
30224009 |
agggggcaaccatcaagaatggcatgcaacccgacattagtaagcaagtttccaaacatcgaaagatgacgtagcttaggcatggtttttgcaatagcaa |
30223910 |
T |
|
| Q |
101 |
ttgcgtcatcattcaactcaatgtctttgctgaacatgctgctaaattttagtgatatccaaagtggacaactccgaccaatgacttcaagagaatcctt |
200 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30223909 |
aagcgtcatcattcaactcgatgtctttactgaacattctgctaaattttaatgatttcaaaagtgggcaactccgaccaatgacttcaagagaatcctt |
30223810 |
T |
|
| Q |
201 |
acataggttgttaaatgaaatgtcaagctcctctagcagaggaaatttgtttgcaaccttactaaattgtctgtgcgaaatatttcggcatttcgtaagc |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| | ||||| |||| ||||| |||||||||||||||| ||||| |
|
|
| T |
30223809 |
acataggttgctaaatgaaatgtcaagctcctctagcagtggaaatttgattgcaacttcactaatttgtttgtgcaaaatatttcggcattttgtaagt |
30223710 |
T |
|
| Q |
301 |
tgtatgcgacgtagttgacttccactgtaagattt |
335 |
Q |
| |
|
|| ||| | ||||| |||||||||||||||||||| |
|
|
| T |
30223709 |
tgcatgtgtcgtaggtgacttccactgtaagattt |
30223675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 30240212 - 30240123
Alignment:
| Q |
11 |
catcaagaatggcatgcaatccgacattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaa |
100 |
Q |
| |
|
|||||||||||| | |||| || |||||||||||| |||||||||| ||| |||| |||||| |||||||||||| ||||||||||||| |
|
|
| T |
30240212 |
catcaagaatggaaagcaacccaacattagtgagtgagtttccaaaaatcataagaaggcgtagcttaggcatggtgtttgcaatagcaa |
30240123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 29649726 - 29649622
Alignment:
| Q |
8 |
atccatcaagaatggcatgcaatccgacattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaattgcgtc |
107 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||| || ||| || | ||| || ||| |||| ||||| |||||||||| ||| ||||||||| || |
|
|
| T |
29649726 |
atccatcaagaatggcaagcaatccatcattagtgagcaaattttcataaatcttaatatgtcgtagcttagtcatggtttttccaacagcaattgcctc |
29649627 |
T |
|
| Q |
108 |
atcat |
112 |
Q |
| |
|
||||| |
|
|
| T |
29649626 |
atcat |
29649622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 334
Target Start/End: Original strand, 16644032 - 16644328
Alignment:
| Q |
35 |
cattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaattgcgtcatcattcaactcaatgtctttgctgaa |
134 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| ||| | |||||||||||||||||||||||| | ||| ||||||| ||| ||| | || ||| |
|
|
| T |
16644032 |
cattagtgagtgtgtttccaatcattgaaagatagcgaagcttaggcatggtttttgcaatagctaatgc---atcattccacttgatgcttctgaagaa |
16644128 |
T |
|
| Q |
135 |
catgctgctaaattttagtgatatccaaagtggacaactccgaccaatgacttcaagagaatccttacataggttgttaaatgaaatgtcaagctcctct |
234 |
Q |
| |
|
| |||||||||||||||||| || ||| || ||| |||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
16644129 |
acttctgctaaattttagtgatttcagaagagggcaaaaacgaccaatgaattcaagagaatccttagatatgttgctaaatgaaatgtcaagctcctct |
16644228 |
T |
|
| Q |
235 |
agcagaggaaatttgtttgcaaccttactaaattgtctgtgcgaaatatttcggcatttcgtaagctgtatgcgacgtagttgacttccactgtaagatt |
334 |
Q |
| |
|
| ||| ||||||||||||||||| | ||| || ||| || ||||||||||| | ||| | || ||| | ||||| ||||| | || |||||||| ||||| |
|
|
| T |
16644229 |
aacagtggaaatttgtttgcaacttcactgaactgtttgggcgaaatattttgacatattgttagccgaatgcgccgtaggttacatccactgtgagatt |
16644328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 35 - 334
Target Start/End: Original strand, 17618393 - 17618689
Alignment:
| Q |
35 |
cattagtgagtaagtttccaaacatcgaaagatggcgtaacttaggcatggtttttgcaatagcaattgcgtcatcattcaactcaatgtctttgctgaa |
134 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||| ||| | |||||||||||||||||||||||| | ||| ||||||| ||| ||| | || ||| |
|
|
| T |
17618393 |
cattagtgagtgtgtttccaatcattgaaagatagcgaagcttaggcatggtttttgcaatagctaatgc---atcattccacttgatgcttctgaagaa |
17618489 |
T |
|
| Q |
135 |
catgctgctaaattttagtgatatccaaagtggacaactccgaccaatgacttcaagagaatccttacataggttgttaaatgaaatgtcaagctcctct |
234 |
Q |
| |
|
| |||||||||||||||||| || ||| || ||| |||||||||| |||||||||||||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
17618490 |
acttctgctaaattttagtgatttcagaagagggcaaaaacgaccaatgaattcaagagaatccttagatatgttgctaaatgaaatgtcaagctcctct |
17618589 |
T |
|
| Q |
235 |
agcagaggaaatttgtttgcaaccttactaaattgtctgtgcgaaatatttcggcatttcgtaagctgtatgcgacgtagttgacttccactgtaagatt |
334 |
Q |
| |
|
| ||| ||||||||||||||||| | ||| || ||| || ||||||||||| | ||| | || ||| | ||||| ||||| | || |||||||| ||||| |
|
|
| T |
17618590 |
aacagtggaaatttgtttgcaacttcactgaactgtttgggcgaaatattttgacatattgttagccgaatgcgccgtaggttacatccactgtgagatt |
17618689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 6046802 - 6046754
Alignment:
| Q |
64 |
agatggcgtaacttaggcatggtttttgcaatagcaattgcgtcatcat |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || ||| ||||||| |
|
|
| T |
6046802 |
agatggcgtaacccaggcatggtttttgcaatagaaaatgcctcatcat |
6046754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University