View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_22 (Length: 413)
Name: NF2703_high_22
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 45791771 - 45792152
Alignment:
| Q |
18 |
agggtcaaaaagcactgcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattct |
117 |
Q |
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| T |
45791771 |
agggtcaaaaagcactgcctatttttgggttaacctagcatgaagaaagtaaaatctgacaccttggtgtataatttgttttatgtatacatgttattct |
45791870 |
T |
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| Q |
118 |
tccttctgtgttttacttatctttt--gtcaataggtatttttgaaaactagcctttcacaattcagtttattctttgttgcaggaaatttcaaaattga |
215 |
Q |
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| T |
45791871 |
tccttctgtgttttacttattttttttgtcaataggtatttttgaaaactagcctttcacaattcagtttattttttgttgcaggaaatttcaaaattga |
45791970 |
T |
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| Q |
216 |
ggtatgagttgtgtccactcgtcatgaaagagaggaagttttggagaatatattttatacttgtgaataatcatgttgcaccgtcagtagtttatactat |
315 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||| |
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| T |
45791971 |
ggtatgagttgtgtccacatgtcatgaaagagaggaagttttggagaatatattttatacttgtgaataatcatatcgcaccgtaagtagtttatactat |
45792070 |
T |
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| Q |
316 |
tgcttgagtattttggttttcgcataaattttgttatttgacatttgtctgaccaagataaatccaatacaaggactatttg |
397 |
Q |
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| T |
45792071 |
tgcttgagtattttggttttcgcataaattttgttatttgacatttgtctgaccaagataaatccaatacaaggactatttg |
45792152 |
T |
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