View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_high_3 (Length: 743)
Name: NF2703_high_3
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 706; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 18 - 731
Target Start/End: Complemental strand, 22122288 - 22121575
Alignment:
| Q |
18 |
agtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgagaatttgttattactaatgttgtgttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22122288 |
agtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgagaatttgttattactaatgttgtgttg |
22122189 |
T |
|
| Q |
118 |
atcttgtttaaaatctaattgtaagttagtataattgtagctttaactttgattttattgatgtgtagatgagtaatttttgagatgatctattttaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22122188 |
atcttgtttaaaatctaattgtaagttagtataattgtagctttaactttgattttattgatgtgtagatgagtaatttttgagatgatctattttaaaa |
22122089 |
T |
|
| Q |
218 |
tttgaatgttaagttttaattgtagcataaactttgattttattgttgtgtagatgaataactttacaaaggaagagtttgtgcatattctgcgtagaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22122088 |
tttgaatgttaagttttaattgtagcataaactttgattttattgttgtgtagatgaataactttacaaaggaagagtttgtgcatattctgcgtagaca |
22121989 |
T |
|
| Q |
318 |
gagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggacagtttcttggaaagaag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22121988 |
gagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggacagtttcttgggaagaag |
22121889 |
T |
|
| Q |
418 |
taagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtatttagttcttaattatat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22121888 |
taagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtatttagttcttaattatat |
22121789 |
T |
|
| Q |
518 |
tggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgcaaggttttaatttatcaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
22121788 |
tggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgcaaggttttaatttatcga |
22121689 |
T |
|
| Q |
618 |
tcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaatt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22121688 |
tcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaatt |
22121589 |
T |
|
| Q |
718 |
gctgtattgatgat |
731 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
22121588 |
gctgtattgatgat |
22121575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 18 - 731
Target Start/End: Original strand, 40512185 - 40512898
Alignment:
| Q |
18 |
agtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgagaatttgttattactaatgttgtgttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40512185 |
agtttcgtggcgtggatgcggatattaatttcaatgtcagtgattatgatgaagatataaagcaggtttgtgagaatttgttattactaatgttgtgttg |
40512284 |
T |
|
| Q |
118 |
atcttgtttaaaatctaattgtaagttagtataattgtagctttaactttgattttattgatgtgtagatgagtaatttttgagatgatctattttaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40512285 |
atcttgtttaaaatctaattgtaagttagtataattgtagctttaactttgattttattgatgtgtagatgagtaatttttgagatgatctattttaaaa |
40512384 |
T |
|
| Q |
218 |
tttgaatgttaagttttaattgtagcataaactttgattttattgttgtgtagatgaataactttacaaaggaagagtttgtgcatattctgcgtagaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40512385 |
tttgaatgttaagttttaattgtagcataaactttgattttattgttgtgtagatgaataactttacaaaggaagagtttgtgcatattctgcgtagaca |
40512484 |
T |
|
| Q |
318 |
gagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggacagtttcttggaaagaag |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40512485 |
gagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggacagtttcttgggaagaag |
40512584 |
T |
|
| Q |
418 |
taagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtatttagttcttaattatat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40512585 |
taagaaaatcctttagtttaatttgatttattagttgagcctaaaatgcttgatttgtgatttatttaaccataaaccagtatttagttcttaattatat |
40512684 |
T |
|
| Q |
518 |
tggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgcaaggttttaatttatcaa |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40512685 |
tggtctgggtttttaattatattggtctgggtttatgtaggtatatatatcttgggctttttgatagcgagctagatgctgcaaggttttaatttatcga |
40512784 |
T |
|
| Q |
618 |
tcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaatt |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40512785 |
tcatatatatcaggatatctcaaatgaaatgcctaattaaatattttggattatttacttttatattttcttttctacatgttgtgttattgacttaatt |
40512884 |
T |
|
| Q |
718 |
gctgtattgatgat |
731 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
40512885 |
gctgtattgatgat |
40512898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 289 - 398
Target Start/End: Original strand, 19053955 - 19054064
Alignment:
| Q |
289 |
gaagagtttgtgcatattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaag |
388 |
Q |
| |
|
||||| ||||||||| | || || |||| |||||||| || |||| |||||||||||||| ||||| || ||| |||| ||||||||| ||||||| | |
|
|
| T |
19053955 |
gaagaatttgtgcatgtactacggcgacaaagtactggatttccaagaggaagttctaaatatagaggtgtgactttgcacaaatgtggaagatgggagg |
19054054 |
T |
|
| Q |
389 |
ctcgtatggg |
398 |
Q |
| |
|
|||| ||||| |
|
|
| T |
19054055 |
ctcggatggg |
19054064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 283 - 398
Target Start/End: Original strand, 6064667 - 6064782
Alignment:
| Q |
283 |
acaaaggaagagtttgtgcatattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgat |
382 |
Q |
| |
|
||||||||||| ||||| ||| | || || ||||| || ||||| || |||| |||||||||||||| ||||| || ||| |||||||||||||| ||| |
|
|
| T |
6064667 |
acaaaggaagaatttgttcatgtactacggagacaaagcactggatttccaagaggaagttctaaatatagaggtgtgactttgcataaatgtggaagat |
6064766 |
T |
|
| Q |
383 |
gggaagctcgtatggg |
398 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
6064767 |
gggaggctcgaatggg |
6064782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 324 - 423
Target Start/End: Complemental strand, 22616562 - 22616463
Alignment:
| Q |
324 |
tggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatgggaagctcgtatgggacagtttcttggaaagaagtaagaa |
423 |
Q |
| |
|
|||||||||||| || ||||| || ||||||||||| || ||||| |||||||| || ||||||||||| |||||||| || ||||| || |||| |||| |
|
|
| T |
22616562 |
tggtttctcaagagggagttcgaagtacagaggagtaacactgcacaaatgtggccgttgggaagctcgaatgggacaattccttggcaaaaagtgagaa |
22616463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 268 - 419
Target Start/End: Complemental strand, 39155177 - 39155026
Alignment:
| Q |
268 |
tagatgaataactttacaaaggaagagtttgtgcatattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgc |
367 |
Q |
| |
|
||||||| ||| || ||||| ||||||||||| ||| | || ||| |||| || |||||||| |||| ||||| |||||||| ||||| ||||| ||| |
|
|
| T |
39155177 |
tagatgactaatttgacaaaagaagagtttgtacatgtacttcgtcgacaaagcactggttttccaagaggaagctctaaatatagaggtgttacattgc |
39155078 |
T |
|
| Q |
368 |
ataaatgtggacgatgggaagctcgtatgggacagtttcttggaaagaagta |
419 |
Q |
| |
|
| ||||||||| ||||||| || | |||||||| ||| | ||||| ||||| |
|
|
| T |
39155077 |
acaaatgtggaagatgggaggcaagaatgggacaatttttaggaaaaaagta |
39155026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 284 - 401
Target Start/End: Original strand, 39644784 - 39644901
Alignment:
| Q |
284 |
caaaggaagagtttgtgcatattctgcgtagacagagtactggtttctcaaggggaagttctaaatacagaggagttactctgcataaatgtggacgatg |
383 |
Q |
| |
|
||||||| || || ||||| ||||| ||| | || |||| |||||||||||||| ||||| |||||||||||||| || || || |||||||| || || |
|
|
| T |
39644784 |
caaaggaggaattcgtgcacattctccgtcgccacagtaacggtttctcaagggggagttcaaaatacagaggagtaacacttcacaaatgtggtcgttg |
39644883 |
T |
|
| Q |
384 |
ggaagctcgtatgggaca |
401 |
Q |
| |
|
||||||| | |||||||| |
|
|
| T |
39644884 |
ggaagctagaatgggaca |
39644901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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