View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2703_high_30 (Length: 367)

Name: NF2703_high_30
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2703_high_30
NF2703_high_30
[»] chr1 (19 HSPs)
chr1 (36-93)||(44962978-44963035)
chr1 (100-139)||(33382249-33382288)
chr1 (98-141)||(43356464-43356507)
chr1 (98-141)||(3481590-3481633)
chr1 (98-137)||(3693789-3693828)
chr1 (98-141)||(42045361-42045404)
chr1 (98-141)||(42440137-42440180)
chr1 (98-140)||(5280660-5280702)
chr1 (98-140)||(16307678-16307720)
chr1 (99-141)||(18043461-18043502)
chr1 (99-141)||(23979405-23979447)
chr1 (99-141)||(24571614-24571656)
chr1 (98-140)||(48131218-48131260)
chr1 (98-140)||(49431983-49432025)
chr1 (100-141)||(3528458-3528499)
chr1 (99-140)||(8269358-8269399)
chr1 (96-141)||(49196375-49196420)
chr1 (98-138)||(13401626-13401666)
chr1 (99-139)||(15670633-15670673)
[»] chr7 (13 HSPs)
chr7 (99-141)||(7994873-7994915)
chr7 (98-141)||(3671853-3671896)
chr7 (98-141)||(5579722-5579765)
chr7 (98-141)||(27833390-27833433)
chr7 (99-140)||(31414128-31414169)
chr7 (98-141)||(40187625-40187668)
chr7 (98-140)||(18773746-18773788)
chr7 (98-140)||(46849097-46849139)
chr7 (101-141)||(145550-145590)
chr7 (100-140)||(6556164-6556204)
chr7 (100-140)||(16971027-16971067)
chr7 (98-138)||(19599174-19599214)
chr7 (98-134)||(45151406-45151442)
[»] chr2 (17 HSPs)
chr2 (98-140)||(27412826-27412868)
chr2 (96-140)||(23718962-23719006)
chr2 (96-140)||(24106634-24106678)
chr2 (98-141)||(9547398-9547441)
chr2 (98-141)||(24592835-24592878)
chr2 (98-141)||(29896283-29896326)
chr2 (98-140)||(15447704-15447746)
chr2 (98-140)||(23407008-23407050)
chr2 (98-140)||(25274819-25274861)
chr2 (99-141)||(25625746-25625788)
chr2 (98-140)||(31815877-31815919)
chr2 (99-140)||(12599855-12599896)
chr2 (96-137)||(33890169-33890210)
chr2 (89-137)||(346117-346165)
chr2 (98-130)||(3904231-3904263)
chr2 (100-140)||(17142861-17142901)
chr2 (100-140)||(17452662-17452702)
[»] chr4 (15 HSPs)
chr4 (98-139)||(22164260-22164301)
chr4 (98-141)||(53617863-53617906)
chr4 (98-140)||(17729455-17729497)
chr4 (98-140)||(18903748-18903790)
chr4 (98-137)||(14202472-14202511)
chr4 (98-140)||(11949753-11949795)
chr4 (98-140)||(21318243-21318285)
chr4 (98-140)||(37930837-37930879)
chr4 (98-140)||(38374986-38375028)
chr4 (100-137)||(6610294-6610331)
chr4 (99-140)||(10035295-10035336)
chr4 (98-139)||(19479468-19479509)
chr4 (98-139)||(22630351-22630392)
chr4 (96-140)||(23247588-23247632)
chr4 (100-140)||(47266183-47266223)
[»] chr8 (10 HSPs)
chr8 (96-140)||(7996967-7997011)
chr8 (98-141)||(19260568-19260611)
chr8 (98-133)||(28439988-28440023)
chr8 (101-140)||(29376933-29376972)
chr8 (98-140)||(6038265-6038307)
chr8 (98-140)||(9192217-9192259)
chr8 (98-140)||(9241044-9241086)
chr8 (99-141)||(12800889-12800931)
chr8 (99-131)||(33373751-33373783)
chr8 (98-130)||(41603090-41603122)
[»] chr6 (15 HSPs)
chr6 (98-140)||(4455586-4455628)
chr6 (98-137)||(20744167-20744206)
chr6 (98-140)||(8138448-8138490)
chr6 (101-139)||(8917632-8917670)
chr6 (98-140)||(9977086-9977128)
chr6 (98-140)||(15155764-15155806)
chr6 (98-140)||(15169960-15170002)
chr6 (98-140)||(15178732-15178774)
chr6 (98-140)||(24623307-24623349)
chr6 (98-140)||(27834368-27834410)
chr6 (98-140)||(32621401-32621443)
chr6 (100-141)||(12440694-12440735)
chr6 (100-137)||(22792933-22792970)
chr6 (100-140)||(12306352-12306392)
chr6 (96-140)||(17113575-17113618)
[»] chr3 (11 HSPs)
chr3 (98-140)||(7464481-7464523)
chr3 (99-136)||(2186421-2186458)
chr3 (96-141)||(14030724-14030769)
chr3 (99-137)||(1111834-1111872)
chr3 (98-140)||(7827537-7827579)
chr3 (98-136)||(21245822-21245860)
chr3 (98-140)||(25441490-25441532)
chr3 (98-140)||(32928578-32928620)
chr3 (99-140)||(27185507-27185548)
chr3 (98-139)||(34899126-34899167)
chr3 (100-140)||(29164743-29164783)
[»] scaffold0111 (1 HSPs)
scaffold0111 (105-141)||(39420-39456)
[»] chr5 (9 HSPs)
chr5 (98-138)||(16094086-16094126)
chr5 (98-141)||(6489036-6489079)
chr5 (98-141)||(15889440-15889483)
chr5 (100-139)||(19647499-19647538)
chr5 (98-137)||(24408524-24408563)
chr5 (98-140)||(17083583-17083625)
chr5 (99-140)||(13864374-13864415)
chr5 (100-141)||(16575311-16575352)
chr5 (100-140)||(25861937-25861977)
[»] scaffold0350 (1 HSPs)
scaffold0350 (98-140)||(1277-1319)
[»] scaffold0050 (1 HSPs)
scaffold0050 (98-140)||(53370-53412)
[»] scaffold0077 (1 HSPs)
scaffold0077 (100-140)||(8718-8758)
[»] scaffold0027 (1 HSPs)
scaffold0027 (100-140)||(42756-42796)


Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 44963035 - 44962978
Alignment:
Q  36 agagaccaattaaaaagtgtaagaaaattggtttcttttacaagacaaaggaattgaa 93  Q
    ||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||    
T  44963035 agagaccaattaaaaagagtcagaaaattagtttcttttacaaggcaaaggaattgaa 44962978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 33382288 - 33382249
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33382288 ataatatatgtaaggtctggtgttcaaaccccgaccacca 33382249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 43356464 - 43356507
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||||||||| ||| |||||||||||||||||||||    
T  43356464 gcataatatatgtaaggtttggagttcaaaccccgaccaccacc 43356507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 3481590 - 3481633
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  3481590 gcataatatatgcaaggtctggggttcaaaccccggccaccacc 3481633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 3693828 - 3693789
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  3693828 gcataatatatgtaaggtctgaggttcaaaccccgaccac 3693789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 42045404 - 42045361
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  42045404 gcataatatatgcaaggtctggagttcaaaccccggccaccacc 42045361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 42440180 - 42440137
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||||||||||||| ||||||||||  |||||||||    
T  42440180 gcataatatatgtaaggtctggagttcaaaccctaaccaccacc 42440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 5280660 - 5280702
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| |||| |||||||||||||||    
T  5280660 gcataatatatgcaaggtctggggttcgaaccccgaccaccac 5280702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 16307678 - 16307720
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| | ||||||||||||||||||    
T  16307678 gcataatatatgcaaggtctggggatcaaaccccgaccaccac 16307720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 18043461 - 18043502
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||| ||||||||| |||||||||||||||||||||    
T  18043461 cataatatatgcaaggtctgg-gttcaaaccccgaccaccacc 18043502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 23979447 - 23979405
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||    
T  23979447 cataatatatgtatggtttggggttcaaaccccgaccaccacc 23979405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 24571656 - 24571614
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||| ||||||||| |||||||| ||||||||||||    
T  24571656 cataatatatgcaaggtctggggttcaaactccgaccaccacc 24571614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 48131260 - 48131218
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| |||||||| | |||||||||    
T  48131260 gcataatatatgtaaggtctggagttcaaactctgaccaccac 48131218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 49432025 - 49431983
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||| || |||||||||||| |||||||    
T  49432025 gcataatatatgtaaggtccggggttcaaaccccggccaccac 49431983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 3528499 - 3528458
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||    
T  3528499 ataatatatgtaaggtccggtgttcaagccccggccaccacc 3528458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 8269399 - 8269358
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||| |||||| || ||||||||||||||||||||    
T  8269399 cataatatatgcaaggtccggggttcaaaccccgaccaccac 8269358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 49196420 - 49196375
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||||||| || ||| ||||||| |||||||||||||    
T  49196420 acgcataatatatgtaaagtttggggttcaaatcccgaccaccacc 49196375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 13401626 - 13401666
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccacc 138  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  13401626 gcataatatatgtaaggttcggggttcaaaccccgaccacc 13401666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 15670673 - 15670633
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    ||||||||||||||||| ||| |||||||||||||| ||||    
T  15670673 cataatatatgtaaggtttggggttcaaaccccgactacca 15670633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 7994915 - 7994873
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7994915 cataatatatgtaaggtctggggttcaaaccccgaccaccacc 7994873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 3671853 - 3671896
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||||||| |||||||||||||||||||||    
T  3671853 gcataatatatgcaaggtctggagttcaaaccccgaccaccacc 3671896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 5579722 - 5579765
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||||||| |||||||||||||||||||||    
T  5579722 gcataatatatgcaaggtctggggttcaaaccccgaccaccacc 5579765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 27833433 - 27833390
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||||||||| || |||||||||||||||||||||    
T  27833433 gcataatatatgtaaggtccggggttcaaaccccgaccaccacc 27833390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 31414128 - 31414169
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||| ||||||| ||||||||||||||||||||    
T  31414128 cataatatatgtagggtctggagttcaaaccccgaccaccac 31414169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 40187668 - 40187625
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||||||||||||  ||||||||||||| |||||||    
T  40187668 gcataatatatgtaaggtctgcggttcaaaccccgaacaccacc 40187625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 18773788 - 18773746
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||| |||||||||||| || ||||||||||||||||||||    
T  18773788 gcataaaatatgtaaggtccggggttcaaaccccgaccaccac 18773746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 46849139 - 46849097
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||| || ||| ||||||||||||||||||||    
T  46849139 gcataatatatgtaaagtttggagttcaaaccccgaccaccac 46849097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 145550 - 145590
Alignment:
Q  101 taatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||| |||||| || |||||||||||||||||||||    
T  145550 taatatatgcaaggtccggggttcaaaccccgaccaccacc 145590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 6556164 - 6556204
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||| ||||||||||||||| || |||||||    
T  6556164 ataatatatgtaagatctggtgttcaaacctcggccaccac 6556204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 16971027 - 16971067
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||   |||||||||||||||||||    
T  16971027 ataatatatgtaaggtctgagattcaaaccccgaccaccac 16971067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 19599174 - 19599214
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccacc 138  Q
    |||||||||||| |||||| || ||||||||||||||||||    
T  19599174 gcataatatatgcaaggtccggggttcaaaccccgaccacc 19599214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 45151406 - 45151442
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgac 134  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  45151406 gcataatatatgtaaggtttggggttcaaaccccgac 45151442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 27412868 - 27412826
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  27412868 gcataatatatgtaaggtctgttgttcaaaccccgaccaccac 27412826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 23718962 - 23719006
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||    
T  23718962 acgcataaaatatgcaaggtctggtgttcaaactccgaccaccac 23719006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 24106634 - 24106678
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||| ||||| |||||||||||||||||| |||||||||||    
T  24106634 acgcataaaatatgcaaggtctggtgttcaaactccgaccaccac 24106678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 9547441 - 9547398
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||    
T  9547441 gcataatatatgcaaggtttggggttcaaaccccgaccaccacc 9547398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 24592878 - 24592835
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  24592878 gcataatatatgcaaggtctggggttcaaaccccggccaccacc 24592835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 29896326 - 29896283
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||    
T  29896326 gcataatatatgcaaggtttggggttcaaaccccgaccaccacc 29896283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 15447746 - 15447704
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| |||||||||||| |||||||    
T  15447746 gcataatatatgcaaggtctggagttcaaaccccggccaccac 15447704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 23407050 - 23407008
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| |||||||||| |||||||||    
T  23407050 gcataatatatgcaaggtctggggttcaaaccctgaccaccac 23407008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 25274861 - 25274819
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| |||| |||||||| ||||||    
T  25274861 gcataatatatgtaaggtctggggttcgaaccccgaacaccac 25274819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 25625746 - 25625788
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||||||||| || |||||||||| ||||||||||    
T  25625746 cataatatatgtaaggtccggggttcaaacccggaccaccacc 25625788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 31815919 - 31815877
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| |||||| || ||||||||||||||||||||    
T  31815919 gcataatatatgcaaggtccggggttcaaaccccgaccaccac 31815877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 12599896 - 12599855
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||| ||||||||| |||| |||||||||||||||    
T  12599896 cataatatatgcaaggtctggggttcgaaccccgaccaccac 12599855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 33890210 - 33890169
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    ||||||||||||||||||||| || |||||||| ||||||||    
T  33890210 acgcataatatatgtaaggtccggcgttcaaactccgaccac 33890169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 346165 - 346117
Alignment:
Q  89 ttgaattacgcataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    |||||| | |||||||||||||||||||  | |||||||||||||||||    
T  346165 ttgaataatgcataatatatgtaaggtccagggttcaaaccccgaccac 346117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 3904231 - 3904263
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccc 130  Q
    |||||||||||||||||||||| ||||||||||    
T  3904231 gcataatatatgtaaggtctggggttcaaaccc 3904263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 17142861 - 17142901
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||| || |||||| ||||||||||||||||||||    
T  17142861 ataatatatgcaaagtctggagttcaaaccccgaccaccac 17142901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 17452662 - 17452702
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||| |||||||||| | |||||||    
T  17452662 ataatatatgtaaggtctggggttcaaaccctggccaccac 17452702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 22164301 - 22164260
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  22164301 gcataatatatgtaaggtctggggttcaaaccccgaccacca 22164260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 53617863 - 53617906
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||    
T  53617863 gcataatatatttaaggtctgctgttcaaaccccgaccaccacc 53617906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 17729455 - 17729497
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  17729455 gcataatatatgcaaggtctggggttcaaaccccgaccaccac 17729497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 18903790 - 18903748
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  18903790 gcataatatatgtaaggtctggggttcaaaccctgaccaccac 18903748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 137
Target Start/End: Complemental strand, 14202511 - 14202472
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  14202511 gcataatatatgtaaggtccggggttcaaaccccgaccac 14202472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 11949795 - 11949753
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| |||||| || ||||||||||||||||||||    
T  11949795 gcataatatatgcaaggtccggggttcaaaccccgaccaccac 11949753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 21318285 - 21318243
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||| | ||||||||||||||||||||    
T  21318285 gcataatatatgcaaggtctagggttcaaaccccgaccaccac 21318243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 37930879 - 37930837
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||  ||||||||||||||||||||    
T  37930879 gcataatatatgcaaggtctgaggttcaaaccccgaccaccac 37930837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 38374986 - 38375028
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| |||||||||||| |||||||    
T  38374986 gcataatatatgcaaggtctggagttcaaaccccggccaccac 38375028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 6610294 - 6610331
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  6610294 ataatatatgcaaggtctggggttcaaaccccgaccac 6610331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 10035295 - 10035336
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||| ||||||||| |||||||||||| |||||||    
T  10035295 cataatatatgcaaggtctggggttcaaaccccggccaccac 10035336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 19479509 - 19479468
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    |||||||||||| |||||| || |||||||||||||||||||    
T  19479509 gcataatatatgcaaggtccggggttcaaaccccgaccacca 19479468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 22630392 - 22630351
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    |||||||||||| ||||||||  |||||||||||||||||||    
T  22630392 gcataatatatgcaaggtctgaggttcaaaccccgaccacca 22630351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 23247632 - 23247588
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||| ||||||||| ||| |||||||| |||||||    
T  23247632 acgcataatatatgcaaggtctggggtttaaaccccggccaccac 23247588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 47266183 - 47266223
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||| |  |||||||||||||||||||    
T  47266183 ataatatatgtaaggtctaggattcaaaccccgaccaccac 47266223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 7996967 - 7997011
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||    
T  7996967 acgcataatatatgcaaggtctggggttcaaaccccgaccaccac 7997011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Complemental strand, 19260611 - 19260568
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||||||||| || |||||||||||| ||||||||    
T  19260611 gcataatatatgtaaggtccggggttcaaaccccggccaccacc 19260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 133
Target Start/End: Original strand, 28439988 - 28440023
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccga 133  Q
    |||||||||||||||||||||| |||||||||||||    
T  28439988 gcataatatatgtaaggtctggggttcaaaccccga 28440023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 29376933 - 29376972
Alignment:
Q  101 taatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  29376933 taatatatgcaaggtctggagttcaaaccccgaccaccac 29376972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 6038307 - 6038265
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| |||||||| ||| |||||||    
T  6038307 gcataatatatgtaaggtctggagttcaaactccggccaccac 6038265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 9192259 - 9192217
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||| |||||| |||||||||||| |||||||    
T  9192259 gcataatatatgtaaagtctggggttcaaaccccggccaccac 9192217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 9241044 - 9241086
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||| | ||||||||||||| |||||||    
T  9241044 gcataatatatgtaaggtccgatgttcaaaccccggccaccac 9241086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 12800931 - 12800889
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||| |||||| || |||||||||||||||||||||    
T  12800931 cataatatatgcaaggtccggggttcaaaccccgaccaccacc 12800889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 33373783 - 33373751
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaacccc 131  Q
    ||||||||||||||||||||| |||||||||||    
T  33373783 cataatatatgtaaggtctggggttcaaacccc 33373751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Original strand, 41603090 - 41603122
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccc 130  Q
    |||||||||||||||||||||| ||||||||||    
T  41603090 gcataatatatgtaaggtctggggttcaaaccc 41603122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 4455628 - 4455586
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| ||||||||||||||||||||    
T  4455628 gcataatatatgcaaggtctggggttcaaaccccgaccaccac 4455586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 20744167 - 20744206
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  20744167 gcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 8138490 - 8138448
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| ||||||||| | ||||||||    
T  8138490 gcataatatatgtaaggtctggggttcaaacctcaaccaccac 8138448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 8917632 - 8917670
Alignment:
Q  101 taatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  8917632 taatatatgtaaggtctggggttcaaaccccggccacca 8917670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 9977086 - 9977128
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| |||||||||| |||||||||    
T  9977086 gcataatatatgcaaggtctggggttcaaaccctgaccaccac 9977128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 15155764 - 15155806
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||    
T  15155764 gcataatatatgcaaggtctggggttcaaaccacgaccaccac 15155806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 15169960 - 15170002
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||  || ||||||||||||||||||||    
T  15169960 gcataatatatgtaaggttcggggttcaaaccccgaccaccac 15170002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 15178732 - 15178774
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||  || ||||||||||||||||||||    
T  15178732 gcataatatatgtaaggttcggggttcaaaccccgaccaccac 15178774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 24623349 - 24623307
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||  || ||||||||||||||||||||    
T  24623349 gcataatatatgtaaggttcggggttcaaaccccgaccaccac 24623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 27834368 - 27834410
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| |||||||||| |||||||||    
T  27834368 gcataatatatgcaaggtctggggttcaaacccggaccaccac 27834410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 32621401 - 32621443
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||| ||  |||||||||||||||||||    
T  32621401 gcataatatatgtaaggtccgggattcaaaccccgaccaccac 32621443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 12440694 - 12440735
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  12440694 ataatatatgcaaggtctggggttcaaacctcgaccaccacc 12440735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 22792970 - 22792933
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    ||||||||||||||||| || |||||||||||||||||    
T  22792970 ataatatatgtaaggtccggggttcaaaccccgaccac 22792933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 12306352 - 12306392
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||  |||||||||||| |||||||    
T  12306352 ataatatatgtaaggtctgaggttcaaaccccggccaccac 12306392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 17113618 - 17113575
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||||| |  ||||||||||||||||||||    
T  17113618 acgcataatatatgtaaggtc-gaggttcaaaccccgaccaccac 17113575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 7464523 - 7464481
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  7464523 gcataatatatgtaaggtccggggttcaaaccccgaccaccac 7464481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 2186458 - 2186421
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgacca 136  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  2186458 cataatatatgtaaggtctggggttcaaaccccgacca 2186421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 14030769 - 14030724
Alignment:
Q  96 acgcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||||    
T  14030769 acgcataatatatgcaaggtttggagttcaaaccccgaccaccacc 14030724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 1111872 - 1111834
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    ||||||||||| ||||||||| |||||||||||||||||    
T  1111872 cataatatatgcaaggtctggggttcaaaccccgaccac 1111834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 7827537 - 7827579
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| |||| || ||||||||||||    
T  7827537 gcataatatatgtaaggtctggagttcgaaacccgaccaccac 7827579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 21245822 - 21245860
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgacca 136  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  21245822 gcataatatatgtaaggtctggggttcaaacctcgacca 21245860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 25441532 - 25441490
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||| ||||||||| |||||||||||| |||||||    
T  25441532 gcataatatatgcaaggtctggggttcaaaccccggccaccac 25441490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 32928620 - 32928578
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||| |||| ||||| ||||||||||||||||||||    
T  32928620 gcataatatatataagatctggagttcaaaccccgaccaccac 32928578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 27185507 - 27185548
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||| ||||||||| ||||||||| ||||||||||    
T  27185507 cataatatatgcaaggtctggggttcaaacctcgaccaccac 27185548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 34899126 - 34899167
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    |||||||||||| |||||| || |||||||||||||||||||    
T  34899126 gcataatatatgcaaggtccggggttcaaaccccgaccacca 34899167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 29164783 - 29164743
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||| || |||||| ||||||||||||||||||||    
T  29164783 ataatatatgcaaagtctggggttcaaaccccgaccaccac 29164743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 39420 - 39456
Alignment:
Q  105 atatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||||| |||||||||||||||||||||    
T  39420 atatgtaaggtctggggttcaaaccccgaccaccacc 39456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 16094086 - 16094126
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccacc 138  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  16094086 gcataatatatgtaagatctggggttcaaaccccgaccacc 16094126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 6489036 - 6489079
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||    
T  6489036 gcataatatatgcaaggtctggggttcaaaccccggccaccacc 6489079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 15889440 - 15889483
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    |||||||||||| ||||||| | |||||||||||||||||||||    
T  15889440 gcataatatatgcaaggtctagggttcaaaccccgaccaccacc 15889483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 139
Target Start/End: Complemental strand, 19647538 - 19647499
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccacca 139  Q
    |||||||||||||||||||| ||||||| |||||||||||    
T  19647538 ataatatatgtaaggtctggggttcaaatcccgaccacca 19647499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 137
Target Start/End: Original strand, 24408524 - 24408563
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccac 137  Q
    |||||||||||| ||||||||| |||||||||||||||||    
T  24408524 gcataatatatgcaaggtctggggttcaaaccccgaccac 24408563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 17083625 - 17083583
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| |||||||||||  |||||||    
T  17083625 gcataatatatgtaaggtctggagttcaaaccccagccaccac 17083583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 13864374 - 13864415
Alignment:
Q  99 cataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||| |||||| || ||||||||||||||||||||    
T  13864374 cataatatatgcaaggtccggggttcaaaccccgaccaccac 13864415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 16575352 - 16575311
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccacc 141  Q
    ||||||||||||||||| || |||||||||| ||||||||||    
T  16575352 ataatatatgtaaggtccggagttcaaaccctgaccaccacc 16575311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 25861977 - 25861937
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    ||||||||||||||||| || |||||||||||| |||||||    
T  25861977 ataatatatgtaaggtccggagttcaaaccccggccaccac 25861937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0350 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 1277 - 1319
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||||| |||||||| ||| |||||||    
T  1277 gcataatatatgtaaggtctggagttcaaactccggccaccac 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 53412 - 53370
Alignment:
Q  98 gcataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||| ||||| ||||||||| ||||||||||||||||||||    
T  53412 gcataaaatatgcaaggtctggggttcaaaccccgaccaccac 53370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 8718 - 8758
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||| |||||||||||||| || ||||||||||||    
T  8718 ataatatatgcaaggtctggtgttcgaatcccgaccaccac 8758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 42756 - 42796
Alignment:
Q  100 ataatatatgtaaggtctggtgttcaaaccccgaccaccac 140  Q
    |||||||||||||||||||  |||||||||| |||||||||    
T  42756 ataatatatgtaaggtctgtagttcaaacccggaccaccac 42796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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