View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_32 (Length: 355)
Name: NF2703_high_32
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_32 |
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| [»] scaffold0426 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 12387079 - 12386738
Alignment:
| Q |
1 |
ctttgagtgaataggctatttcgtctctatatttgtaggtaccggtcaatttcatccttgaatttttcgaaatagccaataggtctctcaattgatcgac |
100 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
12387079 |
ctttgagcgaataggctatttcgtctctatatttgtaggtaccggtcaatttcatccttgaatttttcgaaatagccgataggtctctcaattgatagac |
12386980 |
T |
|
| Q |
101 |
atttgttaaattcagggactcattggctattttgaaaattttggagatgaaatttaccggctcgtacaaattcaaggattaactatcctattcactccat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
12386979 |
atttgttaaattcagggactcattggctattttgaaaattttggggatgaaatttactggctcgtacaaattcaaggactaactatcctattcactccat |
12386880 |
T |
|
| Q |
201 |
aaactttaggacataaaactatgagttgaatgacttaaaccttgtaactgcaaataagtttcagtcggttgtctaattgtcgagtatgactcatattcac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12386879 |
aaactttaggacataaaactatgagttgaatgacttaaaccttgttattgcaaataagtttcagtcggttgtctaattgtcgagtatgactcatattcac |
12386780 |
T |
|
| Q |
301 |
taataaagtagttagacatttgagcgtaacgtaggagacaaa |
342 |
Q |
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| T |
12386779 |
taataaagtagttagacatttgagcgtaacgtaggagacaaa |
12386738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 12382998 - 12382671
Alignment:
| Q |
15 |
gctatttcgtctctatatttgtaggtaccggtcaatttcatccttgaatttttcgaaatagccaataggtctctcaattgatcgacatttgttaaattca |
114 |
Q |
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| T |
12382998 |
gctatttcgtctctatatttgtaggtaccggtcaatttcatccttgaatttttcgaaatagccgataggtctctcaattgatagacatttgttaaattca |
12382899 |
T |
|
| Q |
115 |
gggactcattggctattttgaaaattttggagatgaaatttaccggctcgtacaaattcaaggattaactatcctattcactccataaactttaggacat |
214 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
12382898 |
gggactcattggctattttgaaaattttggggatgaaatttactggctcgtacaaattcaaggactaactatcctattcactccataaactttaggacat |
12382799 |
T |
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| Q |
215 |
aaaactatgagttgaatgacttaaaccttgtaactgcaaataagtttcagtcggttgtctaattgtcgagtatgactcatattcactaataaagtagtta |
314 |
Q |
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| T |
12382798 |
aaaactatgagttgaatgacttaaaccttgttattgcaaataagtttcagtcggttgtctaattgtcgagtatgactcatattcactaataaagtagtta |
12382699 |
T |
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| Q |
315 |
gacatttgagcgtaacgtaggagacaaa |
342 |
Q |
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| T |
12382698 |
gacatttgagcgtaacgtaggagacaaa |
12382671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 12369710 - 12369631
Alignment:
| Q |
249 |
tgcaaataagtttcagtcggttgtctaattgtcgagtatgactcatattcactaataaagtagttagacatttgagcgta |
328 |
Q |
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||||||||||||| | | || |||||||||| |||||||||||||||| ||| ||||||||||||||||||| |||||| |
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| T |
12369710 |
tgcaaataagttttaaaccgtcgtctaattgttgagtatgactcatatttactgataaagtagttagacatttaagcgta |
12369631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 14575024 - 14575101
Alignment:
| Q |
3 |
ttgagtgaataggctatttcgtctctatatttgtaggtaccggtcaatttcatccttgaatttttcgaaatagccaata |
81 |
Q |
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| T |
14575024 |
ttgagtgaataggctatttcgtctcaa-atttgtacgtatcggtcaatttcatccccaaatttttcgaaatagccaata |
14575101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 47302547 - 47302584
Alignment:
| Q |
44 |
ggtcaatttcatccttgaatttttcgaaatagccaata |
81 |
Q |
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| T |
47302547 |
ggtcaatttcatccttcaatttttcgaaatagtcaata |
47302584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0426 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0426
Description:
Target: scaffold0426; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 4846 - 4810
Alignment:
| Q |
45 |
gtcaatttcatccttgaatttttcgaaatagccaata |
81 |
Q |
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| T |
4846 |
gtcaatttcatccctcaatttttcgaaatagccaata |
4810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 51537037 - 51537100
Alignment:
| Q |
2 |
tttgagtgaataggctatttcgtctctatatttgtaggtaccggtcaatttcatccttgaatttt |
66 |
Q |
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||||||| |||||||| |||||||| || ||||||| | |||| |||||||||||||| |||||| |
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| T |
51537037 |
tttgagtaaataggct-tttcgtctttaaatttgtatgcaccgatcaatttcatccttcaatttt |
51537100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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