View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_4 (Length: 659)
Name: NF2703_high_4
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 30544059 - 30544436
Alignment:
| Q |
19 |
cttttctatgagaaagccacagctaattgaaaaaacaaataaaataaacccaattgaacatacggtttttaaaaccctagtgtgaaatttgtatttcaaa |
118 |
Q |
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| T |
30544059 |
cttttctatgagaaagccacagctaattgaaaaaacaaagaaaataaacccaattgaacatacggtttttaaaaccctagtgtgaaatttgtatttcaaa |
30544158 |
T |
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| Q |
119 |
ccaatcaaataaaaggggttttagaatttgaaggggtttttccaaaactaatatgagaacagttttgatcaaagaggagaagagagatactaaccaacgt |
218 |
Q |
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| T |
30544159 |
ccaatcaaataaaaggggttttagaatttgaaggggtttttccaaaactaatatgagaacagttttgatcaaagaggagaagagagatactaaccaacgt |
30544258 |
T |
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| Q |
219 |
tgttggcgacgacgagatgtacggtttgcgaca-----ttgttttgttttgttgtgttgggagacggagacacagaacactctcacaatttctcttcttt |
313 |
Q |
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| T |
30544259 |
tgttggcgacgacgagatgaacggtttgcgacattgttttgttttgttttgttgtgttgggagacggatacacagaacactctcacagtttctcttcttt |
30544358 |
T |
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| Q |
314 |
tcttgtaggttttagttcgcttgataaggggtgttctcggtaatatgttcttatgttaggggcaaaactgtcatcatc |
391 |
Q |
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| T |
30544359 |
tcttgtaggttttagttcgcttgataaggggtgttctcggtaatatgttcttatgttaggggcaaaactgtcatcatc |
30544436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 437 - 647
Target Start/End: Original strand, 30544480 - 30544679
Alignment:
| Q |
437 |
atatgtattcattcaaactgatagatagagtacatcaaatataatatcgtattatacttcatttataaatatnnnnnnnnnnnnntgcatacaaatacta |
536 |
Q |
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| T |
30544480 |
atatgtattcattcaaattgataaa----gtacatcaaatataatatcgtattttacttcatttataaacataaaaaa-------tgcatacaaataata |
30544568 |
T |
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| Q |
537 |
tgatataaatctatagaaagacttataaacatacgaaaaaacatcgtattatttgtattattttttatgtttataaatgaagtatatcatctaatttgaa |
636 |
Q |
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| T |
30544569 |
tgatacaaatctatagaaggacttataaacatacgaaaaaacatcgtattatttgtattattttttatgtttataaatgaagtatatcatctaatttgaa |
30544668 |
T |
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