View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_40 (Length: 311)
Name: NF2703_high_40
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1738255 - 1738009
Alignment:
| Q |
1 |
aagaagtgcatatatatatagttatcaatcaccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcact |
100 |
Q |
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| T |
1738255 |
aagaagtgcatatatatatagttatcaatctccatcactaaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcact |
1738156 |
T |
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| Q |
101 |
catgttggttatgtaagtcaaactaaacaaaaat-aataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatct |
199 |
Q |
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| T |
1738155 |
catgttggttatgtaagtcaaactaaacaaaaataaataaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggcagtatgtagatct |
1738056 |
T |
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| Q |
200 |
agt------agtgtatcattgacatcttccacccatttggcttgatt |
240 |
Q |
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| T |
1738055 |
agtagtgtaagtgtaccattgacatcttccacccatttggcttgatt |
1738009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 39 - 291
Target Start/End: Complemental strand, 1716829 - 1716564
Alignment:
| Q |
39 |
taaaataatgccgttgaagtttcaagtgcactcatgtttgtaaaaaataaaataagtgcactcatgttggttatgtaagtcaa------------actaa |
126 |
Q |
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| T |
1716829 |
taaaataatgtcgttgaagtttcaagtgcactcatgttttaaaaaaaaataaaaagtgcaatcatgttggttatgtaaggcaagctataataataactat |
1716730 |
T |
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| Q |
127 |
acaaaaataa-taaaaggagctttcttttagaaatgagtcattggtaatttcatgaatggaagtatgtagatctagtagtgtatcattgacatcttccac |
225 |
Q |
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| T |
1716729 |
acaaaaataaataaaaggagctttatttcagaaatgagtcaatgataatttcatgaatgacaatatgtagatctagtagtgtacccttgacatcttacgc |
1716630 |
T |
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| Q |
226 |
ccatttggcttgattgccatgctcatcaaaatgactgtatttcaatacattagcaaatacaaataa |
291 |
Q |
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| T |
1716629 |
tcgtttgacttgagttctatgctcatcaaaacgactctatttcaatacattagcagataaaaataa |
1716564 |
T |
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