View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_high_44 (Length: 303)
Name: NF2703_high_44
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_44 |
 | |
|
| [»] scaffold0025 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 13111754 - 13112016
Alignment:
| Q |
24 |
gggttatggtataaacctctcatctctcacaataaaacccctataacttcctcttgtcactatcatatatcagccaacaatctctttcataaataattgc |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13111754 |
gggttatggtataaacctctcatctctcacaataaaacccctataacttcctcttgtcactgtcatatatcagccaacaatctctttcataaataattgc |
13111853 |
T |
|
| Q |
124 |
atatcgaatgttggtgttagaggacatacatgcaacaacatttccaattgtcctccacccgaaaactgataaacaccttgacctactttattactctccc |
223 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13111854 |
atatcggatgttggtgttagaggacatacatgcaacaacacttccaattgtcctccacccgaaaactgataaacaccttgacctactttattactctccc |
13111953 |
T |
|
| Q |
224 |
acatgttttctacttccatcttcctccgtaaacttgtcactcctacgctaccacccaccttca |
286 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| |||| |
|
|
| T |
13111954 |
acatgttttctacttccatcttccttcgtaaaattgtcactccttcgctaccacccacgttca |
13112016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 23 - 286
Target Start/End: Complemental strand, 150405 - 150152
Alignment:
| Q |
23 |
agggttatggtataaacctctcatctctcacaataaaacccctataacttcctcttgtcactatcatatatcagccaacaatctctttcataaataattg |
122 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
150405 |
agggttatggtttaaccctctcatctctcacaataaaactcctctaacttcctcttgtcactgtcatatatcagccaacaatctctttcataaataattg |
150306 |
T |
|
| Q |
123 |
catatcgaatgttggtgttagaggacatacatgcaacaacatttccaattgtcctccacccgaaaactgataaacaccttgacctactttattactctcc |
222 |
Q |
| |
|
||||||| ||||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
150305 |
catatcggatgttggagttagatgacatacacc----------tccaattgtcctccacccaaaaactgataaacaccttgacctactttattactcacc |
150216 |
T |
|
| Q |
223 |
cacatgttttctacttccatcttcctccgtaaacttgtcactcctacgctaccacccaccttca |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
150215 |
cacatgttttctacttccatcttcctccgtaaaattgtcactccttcgctaccacccaccttca |
150152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 13784901 - 13784937
Alignment:
| Q |
25 |
ggttatggtataaacctctcatctctcacaataaaac |
61 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
13784901 |
ggttatggtttaatcctctcatctctcacaataaaac |
13784937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 23902810 - 23902774
Alignment:
| Q |
25 |
ggttatggtataaacctctcatctctcacaataaaac |
61 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
23902810 |
ggttatggtttaatcctctcatctctcacaataaaac |
23902774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University