View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_54 (Length: 247)
Name: NF2703_high_54
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_54 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 26991487 - 26991258
Alignment:
| Q |
18 |
atatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991487 |
atatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttg |
26991388 |
T |
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| Q |
118 |
gtcaaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcgcaataatttgaattttgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26991387 |
gtcaaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcccaataatttgaattttgtt |
26991288 |
T |
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| Q |
218 |
ttcttcatgagcaggtcctgctactgtttt |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
26991287 |
ttcttcatgagcaggtcctgctactgtttt |
26991258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 26975973 - 26976201
Alignment:
| Q |
18 |
atatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttg |
117 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
26975973 |
atatggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggttatgtggaccgttgatgagtctcattgataccgctgttgttg |
26976072 |
T |
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| Q |
118 |
gtcaaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcgcaataatttgaattttgtt |
217 |
Q |
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| T |
26976073 |
gtcaaggaagttcaattgaacttgctgctttaggtatttttatgattttatcacattcactgtttaatt-ttgaaattccgcaataatgtgaattttgtt |
26976171 |
T |
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| Q |
218 |
ttcttcatgagcaggtcctgctactgtttt |
247 |
Q |
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| T |
26976172 |
ttctacatgagcaggtcctgctactgtttt |
26976201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 27005933 - 27005704
Alignment:
| Q |
18 |
atatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttg |
117 |
Q |
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|||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
27005933 |
atatggattcagatgaaggaaattgtattgtttactggacctgctattggtctttggttatgtggaccgttgatgagtctcattgatacagctgttgttg |
27005834 |
T |
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| Q |
118 |
gtcaaggaagttcgattgaacttgctgctttaggtatttttatgattttatgacattcactgtttaattgttgaaattgcgcaataatttgaattttgtt |
217 |
Q |
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||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||| ||||||| ||| |
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| T |
27005833 |
gtcaaggaagttcaattgaacttgctgctttaggtatttatatgattttatcacattgactgtttaattcttgaaattccgcaataatgtgaatttcgtt |
27005734 |
T |
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| Q |
218 |
ttcttcatgagcaggtcctgctactgtttt |
247 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
27005733 |
ttctacatgagcaggtcctgctactgtttt |
27005704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 26946610 - 26946473
Alignment:
| Q |
18 |
atatggattcagatgaaggaaattgttttatttactggacctgcaattggtctttggttatgcggaccgttgatgagtctcattgatactgctgttgttg |
117 |
Q |
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||||||||||| |||||||||||||| |||||| | |||||||| ||| |||||| |||| ||||||||||||||| | || |||||||||||| ||| |
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| T |
26946610 |
atatggattcaattgaaggaaattgttaaatttacagcacctgcaactggactttggatatgtggaccgttgatgagtttaatcgatactgctgttattg |
26946511 |
T |
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| Q |
118 |
gtcaaggaagttcgattgaacttgctgctttaggtatt |
155 |
Q |
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|||| |||||||| ||||| |||||||||||||||||| |
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| T |
26946510 |
gtcagggaagttcaattgagcttgctgctttaggtatt |
26946473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 26954337 - 26954273
Alignment:
| Q |
90 |
atgagtctcattgatactgctgttgttggtcaaggaagttcgattgaacttgctgctttaggtat |
154 |
Q |
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||||| ||||| |||||||||||||||||||| |||||||| | || ||||||||||||||||| |
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| T |
26954337 |
atgagcctcatagatactgctgttgttggtcagggaagttcaaccgagcttgctgctttaggtat |
26954273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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