View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_59 (Length: 238)
Name: NF2703_high_59
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_59 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 124 - 221
Target Start/End: Original strand, 24700376 - 24700473
Alignment:
| Q |
124 |
atttgaatatagcataataaccaaccatggctggtgcaagcactggttccttccctatctaccacagactcttcaacctttcctttactacccattct |
221 |
Q |
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| T |
24700376 |
atttgaatatagcataataaccaaccatggctggtgcaagcactggttccttccctatctaccacagactcttcaacctttcctttactacccattct |
24700473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 24700340 - 24700378
Alignment:
| Q |
21 |
aaaatatttatgaaacccctcaataaaaaattaggcatt |
59 |
Q |
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| T |
24700340 |
aaaatatttatgaaacccctgaataaaaaattatgcatt |
24700378 |
T |
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