View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_68 (Length: 220)
Name: NF2703_high_68
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_68 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 2854357 - 2854174
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854357 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
2854258 |
T |
|
| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaactttgcgtcaac |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2854257 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaactttgcgtcaac |
2854174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 2750589 - 2750772
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
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|||| |||||||||||| |||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||||||| | |||||||||||||| |
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| T |
2750589 |
ggggagtagatctcattgaagagatgaaaatgctaaggcagttaaggaagttaggtttaaagcatgtaagaagggaacatgggaatgccataagtgctgc |
2750688 |
T |
|
| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaactttgcgtcaac |
202 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2750689 |
agtacaagagatgcaacaccttgaatcacttaatatcactgcaatagaagaggatgaaattattgacttaaactttgcgtcaac |
2750772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 2837147 - 2836964
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
| |
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|||| |||||||| ||| |||||||| ||||||||||||| ||| | | |||||||||||||||||||| ||||||||||||| | ||| ||||||| || |
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| T |
2837147 |
ggggagtagatcttattgaagagatggaaatgttaaggcaattatggaagttaggtttaaggcatgtaaaaagagaacatgggaatgccttaagtgcagc |
2837048 |
T |
|
| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaactttgcgtcaac |
202 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
2837047 |
agtagaaaagatgcagcaccttgaatcacttaatatcactgcaatatgcgaggatgaaattattgacttgaactttgtgtcaac |
2836964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 5414487 - 5414662
Alignment:
| Q |
27 |
gatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgcagtagaag |
126 |
Q |
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||||||||| |||||||||| ||| | | ||||||||| | ||| ||||||| |||||||||||||||||| ||| | |||||||||| ||||||| || |
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| T |
5414487 |
gatctcattgaagagatgaagatgcttaagcagttaaggaagttgggtttaaagcatgtaagaagagaacacgggaatgccataagtgtggcagtagtag |
5414586 |
T |
|
| Q |
127 |
agatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaactttgcgtcaac |
202 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
5414587 |
agatgcaataccttgaatcacttaatatcactgcaatagccgaggatgaaattattgacttaaactttgtgtcaac |
5414662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 27 - 177
Target Start/End: Original strand, 2760816 - 2760966
Alignment:
| Q |
27 |
gatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgcagtagaag |
126 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || |
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| T |
2760816 |
gatctcattcaagagatgaaaatgttaagtcagttaagaaggttaggtttaaggcatgtaagaagagagcatggggaggccataagtgctgttatagtag |
2760915 |
T |
|
| Q |
127 |
agatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaa |
177 |
Q |
| |
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| || ||||||||||| |||||||||||| |||| | |||||||||| |
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| T |
2760916 |
aattgaaacaccttgaagatcttaatatcactacaattggtgaggatgaaa |
2760966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 2808861 - 2809007
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| | ||| || ||||||| |
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| T |
2808861 |
ggggggtagatctcattcaagagatgaaaatgttagggcagttaaggaggttaggtttaaggcatgtgagaagagaacatgggaatgccttatgtgctgc |
2808960 |
T |
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| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatag |
165 |
Q |
| |
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| ||| ||| ||| ||||||||||| |||||||||||| |||||| |
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| T |
2808961 |
aatagtagaaatgaaacaccttgaaaatcttaatatcactacaatag |
2809007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 2791908 - 2792081
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||| || |||||| ||||||||||| | ||| || ||||||| |
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| T |
2791908 |
ggggagtagatctcattcaagagatgaaaatgctaaggcagttaaggaggttaggcttaagtcaagtaagacgagaacatgggaatgccttatgtgctgc |
2792007 |
T |
|
| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaact |
192 |
Q |
| |
|
||||| ||| ||| |||||||||||| ||||||||| |||||||| | ||||||||||| || ||||| |||| |
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| T |
2792008 |
agtagcagaaatgaaacaccttgaatatcttaatatctctgcaatatctgaggatgaaatcatcgacttgaact |
2792081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 2820150 - 2820293
Alignment:
| Q |
15 |
cataggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtg |
114 |
Q |
| |
|
|||||||| || ||||||||| | |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
2820150 |
cataggggagtcgatctcattaacgagatgaaaatgttaaagcagttaaggaggttaggtttaaggcatgtaagaagagaacatggggatgccttaagtg |
2820249 |
T |
|
| Q |
115 |
ctgcagtagaagagatgcaacaccttgaatcacttaatatcact |
158 |
Q |
| |
|
||| ||| ||| ||| ||||||||||| |||||||||||| |
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| T |
2820250 |
ctgttatagtagaaatgaaacaccttgaagatcttaatatcact |
2820293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 2770654 - 2770827
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||| |||||| ||||||||||| | ||| || ||||||| |
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| T |
2770654 |
ggggcgtatatctcattcaagagatgaaaatgctaaggcagttaaggaggttaggcttaaggcgagtaagacgagaacatgggaacgccttatgtgctgc |
2770753 |
T |
|
| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaact |
192 |
Q |
| |
|
||||| ||| ||| ||||||||||| ||||||||| ||||||| | ||||||||||| ||||||| |||| |
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|
| T |
2770754 |
agtagcagaaatgaaacaccttgaacatcttaatatctgtgcaatatctgaggatgaaatacttgacttgaact |
2770827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 2798957 - 2799130
Alignment:
| Q |
21 |
ggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgcag |
120 |
Q |
| |
|
||||| |||||||||||||| ||||||||| ||||| | ||||| || | ||||||||||||||| ||| ||||||||||| | || |||||||||| | |
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|
| T |
2798957 |
ggggttgatctcattcaagaaatgaaaatgctaaggaatttaaggagttcaggtttaaggcatgtcagaggagaacatgggaattccttaagtgctgctg |
2799056 |
T |
|
| Q |
121 |
tagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaacttt |
194 |
Q |
| |
|
||| ||| ||| |||||||||| || |||||| | | |||| | |||||||||||||||||| | |||||| |
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|
| T |
2799057 |
tagcagaaatgacacaccttgaaaatctgaatatctcagtaatatcggaggatgaaattattgacctgaacttt |
2799130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 4696 - 4515
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||| | | ||| ||||||| || |
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|
| T |
4696 |
ggggagtagatctcattgaagagatgaaaatactaaggcagttaaggaagttaggtttaaggcatgtaagaagagaacatagccatgccttaagtgcggc |
4597 |
T |
|
| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaactttgcgtca |
200 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
4596 |
attagtagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgacttaaactttgtgtca |
4515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 11116296 - 11116128
Alignment:
| Q |
19 |
ggggggtagatctcattcaagagatgaaaatgttaaggcagttaagaaggttaggtttaaggcatgtaagaagagaacatggggaggccataagtgctgc |
118 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||||||||||||| |||||||||||||| ||| | |||||||| || | | || |||||||||| |
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| T |
11116296 |
ggggagtagatcttatagaagagatgaaaatgttaaggcagttaagaaagttaggtttaaggcgtgtgaaaagagaacttgtgaatgcattaagtgctgc |
11116197 |
T |
|
| Q |
119 |
agtagaagagatgcaacaccttgaatcacttaatatcactgcaatagcagaggatgaaattattgactt |
187 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11116196 |
aatagaagagatgcaacaccttgaatcacttaatatcactgcaattgcagaggatgaaattattgactt |
11116128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 31681562 - 31681654
Alignment:
| Q |
73 |
gtttaaggcatgtaagaagagaacatggggaggccataagtgctgcagtagaagagatgcaacaccttgaatcacttaatatcactgcaatag |
165 |
Q |
| |
|
||||||||||||||||||||||||| ||| | ||| || |||| ||| | | ||| | | ||||||||||| ||||||||||||||||||| |
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|
| T |
31681562 |
gtttaaggcatgtaagaagagaacacgggaatgccgtatgtgcagcaatcgtagaaacgaaacaccttgaaaatcttaatatcactgcaatag |
31681654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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