View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_high_71 (Length: 208)
Name: NF2703_high_71
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_high_71 |
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Alignment Details
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 1503162 - 1503359
Alignment:
| Q |
1 |
tggctctttatttcctctagtggatcacaaggaagttgtttttaccctttctcttgtttttgtttgaacagtnnnnnnnnnnnncctttttaattaactc |
100 |
Q |
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| T |
1503162 |
tggctctttatttcccctagtggatcacaaggaagttgtttttaccctttctcttgtttttgtttgaacagtaaaaaaaaaaa-ccttttcaattaactc |
1503260 |
T |
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| Q |
101 |
acttgnnnnnnnnnnnnnnnaaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctatgc |
199 |
Q |
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| T |
1503261 |
acttgtttttcattttttttaaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctatgc |
1503359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 1508547 - 1508623
Alignment:
| Q |
121 |
aaccttttcctaagaaagcttttagtccttcaccaaatttgcaagccatcataaatttgattttattatttccctatg |
198 |
Q |
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||||||||||||| |||||||| | | |||||||||||| ||||| |||||||||| | ||||||||||||||||| |
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| T |
1508547 |
aaccttttcctaacaaagcttt-atttgttcaccaaatttacaagctatcataaattgaactttattatttccctatg |
1508623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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