View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_10 (Length: 558)
Name: NF2703_low_10
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 9 - 543
Target Start/End: Complemental strand, 2655198 - 2654664
Alignment:
| Q |
9 |
agcacagatggtagtttcttgtagtttatgttctgaattagaagatggagtaattggaaactatatggttacagaatttgtgttgtatgattttactcat |
108 |
Q |
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| T |
2655198 |
agcacagatgctagtttcttgtagtttatgttctgaattagaagatggagtaattggaaactatatggttacagaatttgtgttgtatgattttactcat |
2655099 |
T |
|
| Q |
109 |
tcaagaaaaagtattataccaaagaaaaagtcttacagcaaacaagatgcttcgaaaactctgaatgcttctagccttgaaagtgctactattgttttgc |
208 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2655098 |
tcaagaaaaagtgttataccaaagaaaaagtcttacagcaaacaagatgcttcgaaaactctgaatgcttctagccttgaaagtgctgctattgttttgc |
2654999 |
T |
|
| Q |
209 |
gaataccttttcataagagagaaagcttgaaatacaaaagaggtgatagaatgaaaactaaagcacattccaaacaaagtgacgtctcttcaccagtaga |
308 |
Q |
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| T |
2654998 |
gaataccttttcataagagagaaagcttgaaatacaaaagaggtgatagaatgaaaactaaagcacattccaaacaaagtgatgtctcttcaccagtaga |
2654899 |
T |
|
| Q |
309 |
gcaagtgaaggtggtactaccaattggaaaccatggtttgccgagtgctgaaagtgagggtccttcattgttacttgatcgatggaaacatggtggaggt |
408 |
Q |
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| T |
2654898 |
gcaagtgaaggtggtactaccaattggaaaccatggtttgccgagtgctgaaagtgagggtccttcatcgttacttgatcgatggaaacatggtggaggt |
2654799 |
T |
|
| Q |
409 |
tgcgactgtggtggctgggacatggcctgccctcttattcttttaggcaatcctagtgttcaatttcatgaagatcgccctcttgtggagaaatatcaac |
508 |
Q |
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| T |
2654798 |
tgcgactgtggtggctgggacatggcctgccctcttattcttttaggcaatcctagtgttcaatttcatgaagatcgccctcttgtggagaaatatcaac |
2654699 |
T |
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| Q |
509 |
cactagaacttttctctcagcctcaggtaaagatt |
543 |
Q |
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| T |
2654698 |
cactagaacttttctctcagcctcaggtaaagatt |
2654664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 314 - 521
Target Start/End: Original strand, 40965576 - 40965783
Alignment:
| Q |
314 |
tgaaggtggtactaccaattggaaaccatggtttgccgagtgctgaaagtgagggtccttcattgttacttgatcgatggaaacatggtggaggttgcga |
413 |
Q |
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||||||||||| |||| | ||| ||||||||||||| | |||||| | ||||||| |||| |||||||||||||| || ||| || |||||||| || |
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| T |
40965576 |
tgaaggtggtaataccgactggctaccatggtttgccaaacgctgaatgcaagggtccctcatcgttacttgatcgattgagacacggcggaggttgtga |
40965675 |
T |
|
| Q |
414 |
ctgtggtggctgggacatggcctgccctcttattcttttaggcaatcctagtgttcaatttcatgaagatcgccctcttgtggagaaatatcaaccacta |
513 |
Q |
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| T |
40965676 |
ctgtggtggttgggacatggcctgtccccttgtacttttaggcaatcctagtattcaatttgctgaagaccactcccttatagaggattatcaaccactg |
40965775 |
T |
|
| Q |
514 |
gaactttt |
521 |
Q |
| |
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|||||||| |
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| T |
40965776 |
gaactttt |
40965783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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