View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_12 (Length: 517)
Name: NF2703_low_12
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 274 - 509
Target Start/End: Original strand, 5046691 - 5046926
Alignment:
| Q |
274 |
ggttatacctggaataggaggaaggaaactaaagatatgcataagacaaccatcatcgagattattgatacgagaataacaagatgttcttttcctttca |
373 |
Q |
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| T |
5046691 |
ggttatacctggaataggagaaaggaaactaaagatatgcataagacaaccatcatcgagattattgatacgagaataacaagatgttcttttcctttca |
5046790 |
T |
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| Q |
374 |
cactttttcaactgtcctttgttatcttgttcttgttggttttccatcaccgacatgttctttaatctttgtctttgaagtgcttctacctcctccaccg |
473 |
Q |
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| T |
5046791 |
cactttttcaactgtcctttgttatcttgttgtttttggttttccatcaccgacatgttctttaatctttgtctttgaagtgcttctacctcctccaccg |
5046890 |
T |
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| Q |
474 |
caaattcataaggctttgtttggtttgtgatgatgt |
509 |
Q |
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| T |
5046891 |
caaattcataaggctttgtttggtttgtgatgatgt |
5046926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 5046423 - 5046490
Alignment:
| Q |
20 |
ttcagaatcacttcagctcttccaaagtgaatccatacatgcactaaatctagtgttttcatttatat |
87 |
Q |
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| T |
5046423 |
ttcagaatcacttcagctcttccaaagtgaatccatacatgcactaaatctagtgttttcatttatat |
5046490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 5046557 - 5046610
Alignment:
| Q |
154 |
caatttcaaaaccaagcccatgttacaaatcccaaaataaccaatcaaagtaac |
207 |
Q |
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| T |
5046557 |
caatttcaaaaccaagcccatgttacaaatcccaaaataaccaatcaaagtaac |
5046610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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