View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_13 (Length: 514)
Name: NF2703_low_13
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 114 - 499
Target Start/End: Original strand, 27495055 - 27495440
Alignment:
| Q |
114 |
tctagctaccttcgtaaacaagtaatttgctattatctaataagaaggcaatatctatccagcaattaaatcttaatatgtttcccttctctagaggaaa |
213 |
Q |
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| T |
27495055 |
tctagctaccttcgtaaacaagtaatttgctattatctaataagaaggcaatatctatccagcaattaaatcttaacatgtttcccttctctagaggaaa |
27495154 |
T |
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| Q |
214 |
gttcctgcatctacaaccaaattgttaggcacatgttttactatttatatgtctagtttctaaatcacaacgaacttcttaaaaatatattgaatttgaa |
313 |
Q |
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| T |
27495155 |
gttcctgcatctacaaccaaattgttaggcacatgttttactatttatatgtctagtttctaaatcacagcgaacttcttaaaaatatattgaatttgaa |
27495254 |
T |
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| Q |
314 |
ccacagaaacatgatgttatatgtcttgtcgtctttaactaatttgattcttttggttccaaaatttatctctatataacatcccacaattctttataat |
413 |
Q |
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| T |
27495255 |
ccacagaaacatgatgttatatgtcttgtcgtctttaactaatttgattcttttggttccaaaatttatctctatataacatcccacaattcttcataat |
27495354 |
T |
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| Q |
414 |
gttttcacacttcccacgaactagtcattttcttcaaagcttgttatcaacttctcttgaaggataatggctattcgtttgccttt |
499 |
Q |
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| T |
27495355 |
gttttcacacttcccacgaactagtcattttcttcaaagcttgttatcaacttctcttgaaggataatggctattcgtttgccttt |
27495440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 27495004 - 27495037
Alignment:
| Q |
71 |
tatatattaataatatctagctacttttgtactt |
104 |
Q |
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| T |
27495004 |
tatatattaataatatctagctacttttgtactt |
27495037 |
T |
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