View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_15 (Length: 481)
Name: NF2703_low_15
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Complemental strand, 28495611 - 28495182
Alignment:
| Q |
15 |
caaaggccaagtttatcactttggttaaaccaagggaatcatgaaatgggacaaagttctaattccctttatggttcttctggtttatctgagatagttc |
114 |
Q |
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| T |
28495611 |
caaaggccaagtttatcactttggttaaaccaagggaatcatgaaatgggacaaagttctaattccctttttggttcttctggtttatctgagatagttc |
28495512 |
T |
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| Q |
115 |
aaatgggaaatgctactactaataataataataat---gccttgatttgttcttcttcatcatcaatatttggtatacctgcttcaaattcaacatctgc |
211 |
Q |
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| T |
28495511 |
aaatgggaaatgctgctactaataataataataataatgccttgatttgttcttcttcatcatcaatgtttggtatacctgcttcaaattcaacatctgc |
28495412 |
T |
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| Q |
212 |
tgcaaatctttctctatcaaaacctgcttcttccggttctgttactgtttctgctacaccaatgtcagctactgctcttctgcaaaaagcagctcaaatg |
311 |
Q |
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| T |
28495411 |
tgcaaatctttctctatcaaaacctgcttcttccggttctgttactgtttctgctacaccaatgtcagctactgctcttctgcaaaaagcagctcaaatg |
28495312 |
T |
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| Q |
312 |
ggttcaactagaagcaatactagtaatgataataacaacccttccatttttagttctagttttggtgtaatgacatcaccttcttcttctactagttcag |
411 |
Q |
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| T |
28495311 |
ggttcaactagaagcaatactagtaatgataataacaacccttccatttttagttctagttttggtgtaatgacatcaccttcttcttctactagttcag |
28495212 |
T |
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| Q |
412 |
ctatgttgggaaatagtagtgcaggtgcag |
441 |
Q |
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| T |
28495211 |
ctatgttgggaaatagtagtgcaggtgcag |
28495182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 464
Target Start/End: Complemental strand, 28495193 - 28495165
Alignment:
| Q |
436 |
gtgcaggtgcagctgctaatgctaattat |
464 |
Q |
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| T |
28495193 |
gtgcaggtgcagctgctaatgctaattat |
28495165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 40750153 - 40750216
Alignment:
| Q |
270 |
ccaatgtcagctactgctcttctgcaaaaagcagctcaaatgggttcaactagaagcaatacta |
333 |
Q |
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| T |
40750153 |
ccaatgtcagctactgcacttcttcagaaagcagctcaaataggttcaacaagaagcagtacta |
40750216 |
T |
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