View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_16 (Length: 474)
Name: NF2703_low_16
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 425
Target Start/End: Complemental strand, 43062185 - 43061775
Alignment:
| Q |
15 |
gttttcttaggacaaaagttgttggtactcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43062185 |
gttttcttaggacaaaagttgttggtactcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctct |
43062086 |
T |
|
| Q |
115 |
acttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattgaaattaaacaataatgc |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43062085 |
acttcaggattaggttcaaacttggagactcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattgaaatcaaacaataatgc |
43061986 |
T |
|
| Q |
215 |
aacctttaccttcacccgggttttgcccgacaaatgcaatgttgtgttctaggttctacctacggtatttgcatacgtagaattttattttagttaccaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43061985 |
aacctttaccttcacccgggttttgcccgaaaaatgcaatgttgtgttctaggttctacctacggtatttgcatacgtagaattttattttagttaccaa |
43061886 |
T |
|
| Q |
315 |
atatttcttttctgtaattctaatgatttgcgatgaaatttgttatttgtttattcattcattgttaaacatgttataccatcatgaagtgtgtactttg |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43061885 |
atatttcttttctgtaattctaatgatttgcgatgaaattttttatttgtttattcattcattgttaaacatgttataccatcatgtagtgtgtactttg |
43061786 |
T |
|
| Q |
415 |
gttctcgagaa |
425 |
Q |
| |
|
||||||||||| |
|
|
| T |
43061785 |
gttctcgagaa |
43061775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 43054907 - 43054751
Alignment:
| Q |
42 |
ctcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggag |
141 |
Q |
| |
|
||||||||||||||| | ||||| |||| |||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
43054907 |
ctcgacaatgatcaaatttcggagttcaacaaagataagaatgttggagtttatgatatctatgtgaagctctactttaggattaggtttaaacttggag |
43054808 |
T |
|
| Q |
142 |
actcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattga |
198 |
Q |
| |
|
|||| ||||| | | | ||| |||||||||||||| ||||||| |||||| |||| |
|
|
| T |
43054807 |
actccatatccagaaagttcaaacctaaggtcaaatgcgacctcacagttcctttga |
43054751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 43049373 - 43049217
Alignment:
| Q |
42 |
ctcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctctacttcaggattaggttcaaacttggag |
141 |
Q |
| |
|
||||||| ||||||||||| || || | |||||||||||||| || |||||||| ||||||||||| ||| ||||| ||||||||||||| |||||| | |
|
|
| T |
43049373 |
ctcgacagcgatcaagtctccgagtttaacaaagacaagagtgatgaagtttatgatatctatgtgaggctttactttaggattaggttcagacttgggg |
43049274 |
T |
|
| Q |
142 |
actcgatatctcgcacatacaagcctaaggtcaaatgtgacctcaaagttccattga |
198 |
Q |
| |
|
| | |||||| | |||||||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
43049273 |
atttgatatcgggtgattacaagcctaaggtgaaatgtgacttcaaagttcctttga |
43049217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 43024249 - 43024145
Alignment:
| Q |
15 |
gttttcttaggacaaaagttgttggtactcgacaatgatcaagtctcggaattcagcaaagacaagagtgttggagtttatggtatctatgtgaagctct |
114 |
Q |
| |
|
||||||| ||||||| ||| ||| | ||||||||| |||||||||| || || | |||||| |||||||||| |||||||| |||||||||||| |||| |
|
|
| T |
43024249 |
gttttctcaggacaacggttattgatgctcgacaataatcaagtctctgagtttaacaaagataagagtgttgaagtttatgatatctatgtgaaactct |
43024150 |
T |
|
| Q |
115 |
acttc |
119 |
Q |
| |
|
||||| |
|
|
| T |
43024149 |
acttc |
43024145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University