View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_18 (Length: 453)
Name: NF2703_low_18
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 28 - 407
Target Start/End: Complemental strand, 31828602 - 31828224
Alignment:
| Q |
28 |
tgtgtcaaaaatcaaatcccattaaatccnnnnnnntagcttttgttctatatataatcacaacacacctgctctagcatttgccatccataaatttgtg |
127 |
Q |
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| T |
31828602 |
tgtgtcaaaaatcaaatcccattaaatccaaaaaa-tagcttttgttctatatataatcaaaacacacctcctctagcatttgccatccataaatttgtg |
31828504 |
T |
|
| Q |
128 |
ctaagaccaaacaatgtgttgagggtaccatagggatcagatattaatatagatgtcaaagctatgccaagcataattgaggatcctgcnnnnnnnntta |
227 |
Q |
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| T |
31828503 |
ctaagaccaaacaatgtgttgagggtaccatggggatcagatattagtatagatgtcaaagctatgccaagcataattgaggatcctgcaaaaaaaatta |
31828404 |
T |
|
| Q |
228 |
tagattagtataaaataggtagtagaagacatcaaagaagggaagcctgaaaaagaaatcttacccacataatcaacataggcacttatatcttcctcac |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31828403 |
tagattagtataaaataggtagtagaagacatcaaagaagggaagcctgaaaaagaaatcttacccacataatcagcataggcacttatatcttcctcac |
31828304 |
T |
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| Q |
328 |
tttttgcaatattattaaaattctttacctgaaaataaatatttcatatatgttttatttgaagttgttcaaatacttat |
407 |
Q |
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| T |
31828303 |
tttttgcaatattattaaaatcctttacctgaaaataaatatttcatatatgttttatttgaagttgttcaaatacttat |
31828224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 186 - 400
Target Start/End: Complemental strand, 32116879 - 32116667
Alignment:
| Q |
186 |
aagctatgccaagcataattgaggatcctgcnnnnnnnn-ttatagattagtataaaataggtagtagaagacatcaaagaagggaagcctgaaaaagaa |
284 |
Q |
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| T |
32116879 |
aagctatgccaagcatgattgaggatcctgctaaaaaaaattatagattagtataaaataggtagtagaagacatcaaagaagggaagcatgaaaaagaa |
32116780 |
T |
|
| Q |
285 |
atcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaattctttacctgaaaataaatatttcatatatgtttta |
384 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||||||||||||| |||||| |
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| T |
32116779 |
atcttacccagataatcagcataggcacttatatcttcctcactttttgcaa---aattaaaatcctttacttgaaattaaatatttcatataagtttta |
32116683 |
T |
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| Q |
385 |
tttgaagttgttcaaa |
400 |
Q |
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| T |
32116682 |
tcttaagttgtacaaa |
32116667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 31824799 - 31824763
Alignment:
| Q |
111 |
ccatccataaatttgtgctaagaccaaacaatgtgtt |
147 |
Q |
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| T |
31824799 |
ccatccatagatttgtgctaagaccaaacaacgtgtt |
31824763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 369
Target Start/End: Complemental strand, 39160665 - 39160548
Alignment:
| Q |
248 |
agtagaagacatcaaagaagggaagcctgaaaaagaaatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatattattaaaa |
347 |
Q |
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||||||||||||||||||| |||| ||||||| ||||||||||| |||||| || |||| || |||||||||||||| |||| ||||| |||| ||| |
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| T |
39160665 |
agtagaagacatcaaagaattgaagtctgaaaa-gaaatcttacctacataaccagcataagcgcttatatcttcctcgctttctgcaa---tattgaaa |
39160570 |
T |
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| Q |
348 |
ttctttacctgaaaataaatat |
369 |
Q |
| |
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| || ||||||||||||||||| |
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| T |
39160569 |
tcctctacctgaaaataaatat |
39160548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 2606003 - 2605947
Alignment:
| Q |
284 |
aatcttacccacataatcaacataggcacttatatcttcctcactttttgcaatatt |
340 |
Q |
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|||||||||||||||| | |||| |||||||| || ||||| |||||||||||||| |
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| T |
2606003 |
aatcttacccacataacctgcataagcacttatgtcctcctctctttttgcaatatt |
2605947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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