View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_20 (Length: 434)
Name: NF2703_low_20
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 45596316 - 45596585
Alignment:
| Q |
13 |
aaaattgtagagtatgttagagaacttagatattaaggtcaataaatgataaatcaacaataagatagaaatttatatacaaagagattacatactttga |
112 |
Q |
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| T |
45596316 |
aaaattgtagagtatgttagagaacttagatattaaggtcaataaatgataaatcaacaataagatagaaatttatatacaaagagattacatactttga |
45596415 |
T |
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| Q |
113 |
aattattccaaagggctgcaatctcattttgatagtaatccataccagaccagcttttgaattgtttcaccattttagttgcattagccagctccttggg |
212 |
Q |
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| T |
45596416 |
aattatcccaaagggctgcaatctcattttgatagtaatccataccagaccagcttttgaattgtttcaccattttaggggcattagccagctccttggg |
45596515 |
T |
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| Q |
213 |
aagtttcttaatgatttttatatcatcagcaagagaactaataaacctcttttcatcaaagatgtctgag |
282 |
Q |
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| T |
45596516 |
aagtttgttaatgatttttatatcatcagcaagagaactaataaacctcttttcgtcaaagatgtctgag |
45596585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 373 - 415
Target Start/End: Original strand, 45596664 - 45596706
Alignment:
| Q |
373 |
ataaacctcgagaattaaaataaaaaatacctactatcttgcc |
415 |
Q |
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| T |
45596664 |
ataaaccttgagaattaaaataaaaaatacctactatcttgcc |
45596706 |
T |
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