View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_21 (Length: 433)
Name: NF2703_low_21
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 103 - 428
Target Start/End: Complemental strand, 32805253 - 32804928
Alignment:
| Q |
103 |
attcatcagtgttgttgaaaacctttcatgttagaaacctaggatcatctgacaatttttgttgattatatattagtttcattaaaggtataaaccttaa |
202 |
Q |
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| T |
32805253 |
attcatcagtgttgttgaaaacctttcatgttagaaacctaggatcatctgacaatttttgttgattatatattagtttcattaaaggtataaaccttaa |
32805154 |
T |
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| Q |
203 |
tgttaatgggagcctgagaggcactatttcatctattctaggaatcgagaagaacgttggttttacattttgaatcctcgactacttgactgacattaat |
302 |
Q |
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| T |
32805153 |
tgttaatgggagcctgagaggcactatttcatctattctaggaatcaagaagaacgttggttttacattttgaatcctcggctgcttgattgacattaac |
32805054 |
T |
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| Q |
303 |
tgtagttgacctagggtttagggtgtttcagataatggttgaaagccaagtcattggttttgcgttctcaatcagcaatatgataattgcgcctatttgt |
402 |
Q |
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| T |
32805053 |
tgtagttgacctagggtttagggtgtttcagataatggttgaaagccaagtcattggttttgtgttctcaattagcaatatgataattgcgcctatttgt |
32804954 |
T |
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| Q |
403 |
taggggaacgtttgcaccatcctatg |
428 |
Q |
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| T |
32804953 |
taggggaacgtttgcaccatcttatg |
32804928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 32805322 - 32805238
Alignment:
| Q |
7 |
ccttattgtcgggcattttatttttaaattttaaacgaccttcttgaatcatgtcccttaaaagaaaacattcatcagtgttgtt |
91 |
Q |
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| T |
32805322 |
ccttattgtcgggcattttatttttaaattttaaacgaccttcttgaatcatgtcccttaaaagaaaacattcatcagtgttgtt |
32805238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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