View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_22 (Length: 416)
Name: NF2703_low_22
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_22 |
 | |
|
| [»] scaffold0024 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 2996703 - 2997085
Alignment:
| Q |
13 |
gataatactaatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2996703 |
gataatactaatagcaataattatgaactcaacaatgaaagaaatca--ctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagt |
2996800 |
T |
|
| Q |
113 |
gagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2996801 |
gagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattc |
2996900 |
T |
|
| Q |
213 |
ctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2996901 |
ctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacag |
2997000 |
T |
|
| Q |
313 |
aatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2997001 |
aatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
2997085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 27 - 397
Target Start/End: Complemental strand, 2938194 - 2937826
Alignment:
| Q |
27 |
caataattatgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagta |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
2938194 |
caataattatgaactcaacaatgaaagaaatca--ctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaataagtagta |
2938097 |
T |
|
| Q |
127 |
caattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatt |
226 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || || |||||||| |
|
|
| T |
2938096 |
agattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtagccttcaacttatgccaaggattactgcagaaagcatt |
2937997 |
T |
|
| Q |
227 |
taagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaatcactgtctcca |
326 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||| | || |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2937996 |
taattctttgcaaagaatagagaattgagaactgatatcagaatatacaacatttttgcaaagaccattaaacaaattagccacagaatcactgtctcca |
2937897 |
T |
|
| Q |
327 |
agccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||||||||||||||||||| || |||||||||| | |||||||||| || ||||||||||||||||| |
|
|
| T |
2937896 |
agccaattttccagtattttgttccaaacaagtatacccgcatccttaccggtatttataaggtaatccaa |
2937826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 14 - 396
Target Start/End: Complemental strand, 2935349 - 2934966
Alignment:
| Q |
14 |
ataatactaatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggcttgt---acaacttgcaagacagaacaaactgattgaataaaa |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2935349 |
ataatactaatagaaataattatgaactcaacaatgaaagaaatca--ctaggaggcttgttgtacaacttgcaagacagaacaaactgattgaagtaaa |
2935252 |
T |
|
| Q |
111 |
gtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggat |
210 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2935251 |
gtgagaaaaagtagtaagattccagcaatggaagcagcagtttgccaaggagttttgcaataatcacgcctgagagtagccttcaacttatgccaaggat |
2935152 |
T |
|
| Q |
211 |
tcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccac |
310 |
Q |
| |
|
|| ||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | ||| ||||||| | |||||||||||||||||||||||||| |
|
|
| T |
2935151 |
tcttacaaaaagcatttaagtctttgcatagaatagagaaatgagaactgatattagattgtgtaacatttttccaaagaccattaaacaagttagccac |
2935052 |
T |
|
| Q |
311 |
agaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatcca |
396 |
Q |
| |
|
||||||||| || ||||| ||| | ||||||||| || |||||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
2935051 |
agaatcactatccgcaagcatattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatcca |
2934966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 388
Target Start/End: Complemental strand, 2930059 - 2929684
Alignment:
| Q |
13 |
gataatactaatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagt |
112 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2930059 |
gataataagaataacaataattatgaactcaacaataaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagt |
2929960 |
T |
|
| Q |
113 |
gagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattc |
212 |
Q |
| |
|
||||| |||||||| | |||||||| ||||||||||| |||||||||||| | | |||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2929959 |
gagaaaaagtagtaagaatccagcaatggaagcagcagtttgccaaggagtacttcaataatcacgcctgagagtagccttcaacctatgccaaggattc |
2929860 |
T |
|
| Q |
213 |
ctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacag |
312 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||| ||||||||| | ||||| || || | |||||| ||||||||||| ||||||||||| |
|
|
| T |
2929859 |
taacaaaaagcatttaagtctttgcatagaatagagaaatgaggactgatattagaatgtataatatatttgcaaaaaccattaaacatgttagccacag |
2929760 |
T |
|
| Q |
313 |
aatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataag |
388 |
Q |
| |
|
||| | ||||||||| ||||||||||||||||||||| |||| ||||||||| | ||||||||||| |||||||| |
|
|
| T |
2929759 |
aatgattgtctccaaaccaattttccagtatttctttctgaataagtatatcggcgtccttaccagtatttataag |
2929684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 62 - 397
Target Start/End: Complemental strand, 2927861 - 2927526
Alignment:
| Q |
62 |
ctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaagga |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||| ||||||||||| |||||||||| |
|
|
| T |
2927861 |
ctaggaggcttgtacaacttgcaagacagaacaaactgattgaagtaaagtgagaacaagtagtaagattcccgcaatggaagcagcagtttgccaagga |
2927762 |
T |
|
| Q |
162 |
gtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactga |
261 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2927761 |
gttttgcaataatcacgcctgagagtagccttcaacttatgtcgtggattcttacaataagcatttaagtctttgcaaagaatagagaattgagaactga |
2927662 |
T |
|
| Q |
262 |
tattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtat |
361 |
Q |
| |
|
| | | | || ||||||| | | |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| | ||||||||||| |
|
|
| T |
2927661 |
ttgtagaacgtgtaacatttttaccaagaccattaaacaagttagccacagaatcaccgtctccaagcatattttccagtatttccctctgaacaagtat |
2927562 |
T |
|
| Q |
362 |
atcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
2927561 |
atccacatccttaccagtatttataaggtaatccaa |
2927526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 28 - 397
Target Start/End: Complemental strand, 2974740 - 2974373
Alignment:
| Q |
28 |
aataattatgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtac |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||| |||||| | ||||||||||||||| | |
|
|
| T |
2974740 |
aataattatgaactcaacaatgaaagaaatca--ctaggatgcttgtactacttgcaagacagaacaaactctttgaattatagtgagaacaagtagaaa |
2974643 |
T |
|
| Q |
128 |
aattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcattt |
227 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||| |||| |||||||||||| |||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2974642 |
aattccagcaatggaagcagcagtgtgccaaggagtattgcaataatcacgccttagagcagccttcaacctatgccaaggattcctacaataagcattc |
2974543 |
T |
|
| Q |
228 |
aagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaatcactgtctccaa |
327 |
Q |
| |
|
|| || ||||||||||||||||| |||||||||||||| | || | || |||| | |||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
2974542 |
aattctttgcaaagaatagagaaatgagaactgatattagaatttgtaatattttctccaagaccattaaataagatagcaacagaatcactgtctccaa |
2974443 |
T |
|
| Q |
328 |
gccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||||||||| |||||| | | ||||||||||||| |||||| ||| ||| ||||||||||||||||| |
|
|
| T |
2974442 |
gccaattttgcagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatccaa |
2974373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 89 - 397
Target Start/End: Original strand, 3003188 - 3003496
Alignment:
| Q |
89 |
agaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagta |
188 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||| |||| |||||||||| ||||||||||| |||||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
3003188 |
agaacaaactgtttgaagtaaagtgagagcaaggagtaagattccagcaatggaagcagcagtttgccagggagttttgcaataatcacgcctgagagta |
3003287 |
T |
|
| Q |
189 |
gccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaa |
288 |
Q |
| |
|
||||||||||||||||| |||||| ||||| ||||||||||||| |||| |||||||||||||||||||||||| | | | ||| || || | ||| || |
|
|
| T |
3003288 |
gccttcaacttatgccatggattcttacaataagcatttaagtctttgccaagaatagagaattgagaactgattgtagaacgtataatatctttgccaa |
3003387 |
T |
|
| Q |
289 |
gaccattaaacaagttagccacagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataag |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
3003388 |
gaccattaaacaagttagccacagaatcactgtctccaagcatattttccagtatttcgctctgaacaagtatatccacatccttagcagtatttataag |
3003487 |
T |
|
| Q |
389 |
gtaatccaa |
397 |
Q |
| |
|
||||||||| |
|
|
| T |
3003488 |
gtaatccaa |
3003496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 2965280 - 2964875
Alignment:
| Q |
13 |
gataatactaatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggc---------ttgtacaacttgcaagacagaacaaactgattg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||| |||||||||| |||||||| ||| |
|
|
| T |
2965280 |
gataatactaatagcaataattatgaactcaacaatgaaagaaatca--ctaggaagcattaggttgttgtactacttgcaaga----acaaactgtttg |
2965187 |
T |
|
| Q |
104 |
aataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaactt---- |
199 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| | ||||| | ||||||||| |
|
|
| T |
2965186 |
aattaaagtgagaacaagtagtaagattccagcaaaggaagcagcagcttgccaaggagtactgcagtaatcacgcatcagagtggacttcaacttcaac |
2965087 |
T |
|
| Q |
200 |
------at--------gccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgc |
285 |
Q |
| |
|
|| |||||||||||| |||||||||||| || || ||||||||||||||||||||| ||||||||| | ||||| ||||| | || |
|
|
| T |
2965086 |
gtcaacattaactggcgccaaggattcccacaaaaagcattcaaatctttgcaaagaatagagaattgaagactgatattagaatgtataacatatttgg |
2964987 |
T |
|
| Q |
286 |
aaagaccattaaacaagttagccacagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttat |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| || |||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
2964986 |
aaagaccattaaacaagttagccacagaatcactatctccaagcatattttccagtattttgttctgaacaagtatatccacatccttgccagtatttat |
2964887 |
T |
|
| Q |
386 |
aaggtaatccaa |
397 |
Q |
| |
|
|||||||||||| |
|
|
| T |
2964886 |
aaggtaatccaa |
2964875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 22 - 397
Target Start/End: Complemental strand, 2983605 - 2983232
Alignment:
| Q |
22 |
aatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaag |
121 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | |||||| |||||||| | |||||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
2983605 |
aataacaataattatgaactcaacaatgaaagaaatga--ctaggatgcttgtactatttgcaagacagaacaaactgtttgaattatagtgagaacaag |
2983508 |
T |
|
| Q |
122 |
tagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaa |
221 |
Q |
| |
|
||||| | |||||||| |||||||||| || ||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||| |||||||| |
|
|
| T |
2983507 |
tagtaagactccagcaacggaagcagcaattttccaaggagtattgccataatcacgcctgagagtggccttcaacttattcctaggattattacaaaaa |
2983408 |
T |
|
| Q |
222 |
gcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacagaatcactgt |
321 |
Q |
| |
|
|||| || || ||| ||||| | ||| ||| |||||| || | | |||||||||| |||||||||||||||||||| |||||| ||| | || || |
|
|
| T |
2983407 |
gcatccaattcattggaaagacttacgaaatgataactgagtttagattttacaacatttttgcaaagaccattaaacaagatagccatagattgaccgt |
2983308 |
T |
|
| Q |
322 |
ctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
|||||||| | ||||| ||||||| || |||| ||||| ||| |||||||||||| | ||||||||||||||||| |
|
|
| T |
2983307 |
ctccaagcaagttttctagtatttgcttctgaataagtacatccacatccttaccattatttataaggtaatccaa |
2983232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 27 - 397
Target Start/End: Original strand, 2658311 - 2658697
Alignment:
| Q |
27 |
caataattatgaactcaacaatgaaagaaatcaagctaggaggc------ttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaa |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| | |||||| ||||| |||||||||||||||| |||||| | |||||||| || |
|
|
| T |
2658311 |
caataattatgaaccgaacaatgaaagaaatca--ctaggagccattaggttgtactacttgaaagacagaacaaactgtttgaattatagtgagaataa |
2658408 |
T |
|
| Q |
121 |
gtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagc------------cttcaacttatgccaagg |
208 |
Q |
| |
|
|||||| |||||||||||||||||| |||||| ||||||||| ||| |||||||||||| ||||| | ||| |||||| ||||||| |
|
|
| T |
2658409 |
gtagtaagattccagcaaaggaagcaccagctttccaaggagtactgcaataatcacgcctcagagtgccaatcaatgagtacttaaacttaggccaagg |
2658508 |
T |
|
| Q |
209 |
attcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagcc |
308 |
Q |
| |
|
||||||||||||| | |||||||| | |||||||||| ||| |||| |||| |||| ||| ||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2658509 |
attcctacaaaaatcttttaagtcttcacaaagaatagtgaaatgaggactgctattacaatgagtaacatttttgcaaagaccagtaaacaagttagcc |
2658608 |
T |
|
| Q |
309 |
acagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
2658609 |
acagaatcactgtctccaagccaattttccagtattttgtttggaacaagtatatccacatccttaccagtatttataaggtaatccaa |
2658697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 89 - 397
Target Start/End: Complemental strand, 2952610 - 2952299
Alignment:
| Q |
89 |
agaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagta |
188 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||| ||||| |||||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
2952610 |
agaacaaactgtttgaagtaaagtgagagcaaggagtacgattccagcaatggaagcagcagtttgccaaggagttttgccataatcacgcctcagagtg |
2952511 |
T |
|
| Q |
189 |
gccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaa |
288 |
Q |
| |
|
|| |||||||||| ||||||||| |||||||| ||||||| || |||| || |||||||||||||||||||||||| | || |||||||||| |||||| |
|
|
| T |
2952510 |
gctttcaacttattccaaggattactacaaaatgcatttatttctttgccaataatagagaattgagaactgatattagaatatacaacatttttgcaaa |
2952411 |
T |
|
| Q |
289 |
gaccattaaacaagttagccacagaatc---actgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttat |
385 |
Q |
| |
|
|||||||||| ||||||||||||||| ||| ||||||||| ||| || ||||| || | ||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
2952410 |
taccattaaacctgttagccacagaatcactactttctccaagcatattatctagtatatccctccgaacaagtatatccacatcggtaccagtatttat |
2952311 |
T |
|
| Q |
386 |
aaggtaatccaa |
397 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
2952310 |
aatgtaatccaa |
2952299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 192 - 394
Target Start/End: Complemental strand, 2979450 - 2979257
Alignment:
| Q |
192 |
ttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagac |
291 |
Q |
| |
|
||||||| |||||||||||| ||| ||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||||| ||||||| |
|
|
| T |
2979450 |
ttcaactcatgccaaggattactataaaaatcatttaaatctttgcaaagaatagagaaatgagaactgatatt---------aacattttcgcaaagat |
2979360 |
T |
|
| Q |
292 |
cattaaacaagttagccacagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggta |
391 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |||||| |||| || ||||||||||| |
|
|
| T |
2979359 |
cattaaacaatttagcagcagaatgactgtctccaagcaaattttccagtattttgctccgaacaagtatatccacatccgtaccggtatttataaggta |
2979260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 2954829 - 2954726
Alignment:
| Q |
13 |
gataatactaatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagt |
112 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
2954829 |
gataatactaatagcaataat-atgaactcaacattgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaattgattgaagtaaagt |
2954733 |
T |
|
| Q |
113 |
gagaaca |
119 |
Q |
| |
|
|| |||| |
|
|
| T |
2954732 |
gataaca |
2954726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 242
Target Start/End: Complemental strand, 2954725 - 2954662
Alignment:
| Q |
179 |
cctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaaga |
242 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
2954725 |
cctgagagtagccttcaacttacgccaaggattcctacaaaaagcatttaattctttgcaaaga |
2954662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 397
Target Start/End: Complemental strand, 2985771 - 2985694
Alignment:
| Q |
320 |
gtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||||| || ||||||||||||||||| || |||||||||||||| ||||||||| ||| ||||||||||||||||| |
|
|
| T |
2985771 |
gtctcgaaaccaattttccagtatttggttctgaacaagtatatccgcatccttactagtatttataaggtaatccaa |
2985694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 2986472 - 2986421
Alignment:
| Q |
21 |
taatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggcttgt |
74 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2986472 |
taataacaataattatgaactcaacaatgaaagaaatca--ctaggaggcttgt |
2986421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 59
Target Start/End: Complemental strand, 2952689 - 2952658
Alignment:
| Q |
28 |
aataattatgaactcaacaatgaaagaaatca |
59 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2952689 |
aataattatgaactcaacaatgaaagaaatca |
2952658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 14 - 397
Target Start/End: Original strand, 34573 - 34954
Alignment:
| Q |
14 |
ataatactaatagcaataattatgaactcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaagtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
34573 |
ataatactaatagcaataattatgaactcaacaatgaaagaaatca--ctaggaggcttgtactacttgcaagacagaacaaactgattgaagcaaagtg |
34670 |
T |
|
| Q |
114 |
agaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggattcc |
213 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||| | |
|
|
| T |
34671 |
agaacaagtagtaaaattccagcaacggaagcagcagtttgccaaggagttttgccataatcacgcctgagagaagccttcaacctattccaaggattac |
34770 |
T |
|
| Q |
214 |
tacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccacaga |
313 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
34771 |
tacaaaatgcatttaagtttttgcaaagaatagagaaatgagaactgatattatgatgtataacatttttgcaaagacgattaaacaagttagccacaga |
34870 |
T |
|
| Q |
314 |
atcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||||||||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
34871 |
atcactgtctccaagcaaattagtcagtatttctttccgaacaagtatatccgcatccttaccagtatttataaggaaatccaa |
34954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 286 - 397
Target Start/End: Original strand, 44532 - 44643
Alignment:
| Q |
286 |
aaagaccattaaacaagttagccacagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttat |
385 |
Q |
| |
|
||||| |||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||| | ||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
44532 |
aaagatcattaaacaaattagccacataatgactgtctccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatttat |
44631 |
T |
|
| Q |
386 |
aaggtaatccaa |
397 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44632 |
aaggtaatccaa |
44643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 397
Target Start/End: Complemental strand, 3339775 - 3339391
Alignment:
| Q |
14 |
ataatactaatagcaataattatga---actcaacaatgaaagaaatcaagctaggaggcttgtacaacttgcaagacagaacaaactgattgaataaaa |
110 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
3339775 |
ataatactaagagcaataattatgatgaactcaacaaagaaagaaatca--ctaggaggcctgtactacttgcaagacagaacaaactgattgaagtaaa |
3339678 |
T |
|
| Q |
111 |
gtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatcacgcctgagagtagccttcaacttatgccaaggat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
3339677 |
gtgagaacaagtagtacaattccagcaatggaagcagcagtttgccaaggagtattgcaataatcacgcctgagagtggccttcaacctatgccaaggat |
3339578 |
T |
|
| Q |
211 |
tcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatgtacaacatttatgcaaagaccattaaacaagttagccac |
310 |
Q |
| |
|
|| |||||||| |||||||||| |||| |||| ||| ||| |||||||| | | | | ||| | ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
3339577 |
tcttacaaaaatcatttaagtctttgccaagagtagggaaatgagaacttacactagaatgcataacatttttgcaaagaccattaaacaatttagccac |
3339478 |
T |
|
| Q |
311 |
agaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatccttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| | | |||||||||||| |||||| ||| ||| ||||||||| ||||||| |
|
|
| T |
3339477 |
agaatcactgtctgcaagccaattttctagtatttcgctcttaacaagtatatccacatccatactagtatttataaggaaatccaa |
3339391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 72 - 397
Target Start/End: Complemental strand, 49619102 - 49618778
Alignment:
| Q |
72 |
tgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccat |
171 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
49619102 |
tgtacaacttgcaagatagaacaaactgattgaagtaaagagagaacaagtagtaaaattccagcaatggaagcagcagtttgccaaggagtactgccat |
49619003 |
T |
|
| Q |
172 |
aatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtatg |
271 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||| || | ||||| || ||||| | |||| |||||||||| ||| |||| |
|
|
| T |
49619002 |
aatcacgcctgagagtagccttcagtttatgccaaggattattacaaaaacca-tcaagtctttaggaagaagacagaaatgagaactgaaatttatatg |
49618904 |
T |
|
| Q |
272 |
tacaacatttatgcaaagaccattaaacaagttagccacagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatcc |
371 |
Q |
| |
|
| ||||||| | |||||||||||| ||||||| |||||||||||||||||| ||||| ||| ||| ||||| || | |||||||||||||| ||||| |
|
|
| T |
49618903 |
tgaaacatttttccaaagaccattatacaagtttgccacagaatcactgtctgcaagcatattatcctgtattcctctctgaacaagtatatccgcatcc |
49618804 |
T |
|
| Q |
372 |
ttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
|||| | ||||||||||||||||| |
|
|
| T |
49618803 |
ctaccgatatttataaggtaatccaa |
49618778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 71 - 397
Target Start/End: Complemental strand, 49614128 - 49613802
Alignment:
| Q |
71 |
ttgtacaacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgcca |
170 |
Q |
| |
|
||||||||||||||| || | |||||||||||||| |||| ||||| |||||||| ||||||||||| ||||||||||| |||||||||| | |||| | |
|
|
| T |
49614128 |
ttgtacaacttgcaacactgcacaaactgattgaagtaaagagagaataagtagtaaaattccagcaatggaagcagcagtttgccaaggactgttgcaa |
49614029 |
T |
|
| Q |
171 |
taatcacgcctgagagtagccttcaacttatgccaaggattcctacaaaaagcatttaagtccttgcaaagaatagagaattgagaactgatattggtat |
270 |
Q |
| |
|
|||||||| |||||||| |||||||| |||||||||||| ||||||| |||| ||||| | || ||||||||| | |||||||||| || || |
|
|
| T |
49614028 |
taatcacgtctgagagtcgccttcaatctatgccaaggatcatgacaaaaaccattcaagtcttcacatagaatagagtactgagaactgaaatacaaat |
49613929 |
T |
|
| Q |
271 |
gtacaacatttatgcaaagaccattaaacaagttagccacagaatcactgtctccaagccaattttccagtatttctttgtgaacaagtatatcaacatc |
370 |
Q |
| |
|
|| ||||||| | ||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||||| || |||||||||||||| ||||| |
|
|
| T |
49613928 |
gtgtaacatttttccaaagactattaaacaagttagccacagaatcactatccccaagccaattcaccagtattttcttctgaacaagtatatccacatc |
49613829 |
T |
|
| Q |
371 |
cttaccagtgtttataaggtaatccaa |
397 |
Q |
| |
|
||| ||||| || |||||| ||||||| |
|
|
| T |
49613828 |
cttgccagtattaataaggaaatccaa |
49613802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 207
Target Start/End: Complemental strand, 49617763 - 49617639
Alignment:
| Q |
77 |
aacttgcaagacagaacaaactgattgaataaaagtgagaacaagtagtacaattccagcaaaggaagcagcagcttgccaaggagtcttgccataatca |
176 |
Q |
| |
|
|||| ||||||||||| |||||||||||| ||| ||||| |||||||| ||||||||||| |||||||| | ||||||| || ||| | ||||| |
|
|
| T |
49617763 |
aactcgcaagacagaataaactgattgaagtaaa--gagaataagtagtaaaattccagcaacagaagcagctg-ttgccaactag---tgcaaaaatca |
49617670 |
T |
|
| Q |
177 |
cgcctgagagtagccttcaacttatgccaag |
207 |
Q |
| |
|
||||||||||||||||||| ||| |||||| |
|
|
| T |
49617669 |
tgcctgagagtagccttcaatttaagccaag |
49617639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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