View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_27 (Length: 392)
Name: NF2703_low_27
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 38400272 - 38399910
Alignment:
| Q |
16 |
aataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38400272 |
aataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttg |
38400173 |
T |
|
| Q |
116 |
tcagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttc |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38400172 |
tcagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctctaggatctgcattggttaagaagcttc |
38400073 |
T |
|
| Q |
216 |
agttctttggtacaacattatttttgcctatctttgtaactacttgtgtgtttaaagcggatttttcaatggatttgtcatcatatgttatggtatctgc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
38400072 |
agttctttggtacaacattatttttgcctatctttgtaactacttgtgtgtttaaagcggatttttcaatggatatgtcatcatatgttatggtatctgc |
38399973 |
T |
|
| Q |
316 |
tggtttactggtccttgtaactcacttggtcaaaatggcagcattgtttataaccgccctttg |
378 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
38399972 |
tggtttactggtccttgcaactcacttggtcaaaatggcagcattatttataactgccctttg |
38399910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 38382825 - 38382463
Alignment:
| Q |
16 |
aataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||| |
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|
| T |
38382825 |
aataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacctttatgttatcatttcaatggtttttgtttttggcattttg |
38382726 |
T |
|
| Q |
116 |
tcagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttc |
215 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38382725 |
tcagttaagattaatcaagaatttgccataggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttc |
38382626 |
T |
|
| Q |
216 |
agttctttggtacaacattatttttgcctatctttgtaactacttgtgtgtttaaagcggatttttcaatggatttgtcatcatatgttatggtatctgc |
315 |
Q |
| |
|
|||| ||| |||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||| | ||||||| ||||||||| | | | |
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|
| T |
38382625 |
agtttttttgtacaacattctttttgccaatctttgtaaccacttgtgtgttgaaagcagatttttcaatggatgtttcatcatctgttatggtgtatac |
38382526 |
T |
|
| Q |
316 |
tggtttactggtccttgtaactcacttggtcaaaatggcagcattgtttataaccgccctttg |
378 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||| |||||||| |||||||| |
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|
| T |
38382525 |
tggtttagcggtccttgtaactcacttggtcaaaatgacagcatgctttataactgccctttg |
38382463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 38391683 - 38391321
Alignment:
| Q |
16 |
aataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttg |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38391683 |
aataatgttttggatcatcaaacatacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttg |
38391584 |
T |
|
| Q |
116 |
tcagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttc |
215 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38391583 |
tcagttaagattaatcaagaatttgtcttgggagttttcgttttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttc |
38391484 |
T |
|
| Q |
216 |
agttctttggtacaacattatttttgcctatctttgtaactacttgtgtgtttaaagcggatttttcaatggatttgtcatcatatgttatggtatctgc |
315 |
Q |
| |
|
|||| ||| |||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||| | | ||||| | | | |
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|
| T |
38391483 |
agttttttagtacaacattctttttgccaatctttgtaacaacttgtgtgttgaaagcagatttttcaatggatttttcatcatctatgatggtgtatac |
38391384 |
T |
|
| Q |
316 |
tggtttactggtccttgtaactcacttggtcaaaatggcagcattgtttataaccgccctttg |
378 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||| |
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|
| T |
38391383 |
tggtttagcggtccttgtaactcacttggtcaaaatggcagcattatttataactgtcctttg |
38391321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 37839809 - 37840171
Alignment:
| Q |
16 |
aataatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggtttttgttcttggtattttg |
115 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
37839809 |
aataatgttttggatcatcaaacatacaccagaaggaagacctgtgaaagatagttacatttatgttatcatttcaacggtttttcttcttggtattttt |
37839908 |
T |
|
| Q |
116 |
tcagttaagattaatcaattatttggcttaggagctttcattttgggactgtctgttcctgaaggacctcctttaggatctgcattggttaagaagcttc |
215 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
37839909 |
tcagttaagattaatcaagaatttgtcttaggagccttcattttgggactgtctgttcctgaaggagctcctttaggatctacattggttaagaagcttc |
37840008 |
T |
|
| Q |
216 |
agttctttggtacaacattatttttgcctatctttgtaactacttgtgtgtttaaagcggatttttcaatggatttgtcatcatatgttatggtatctgc |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||| ||||||| ||| |
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|
| T |
37840009 |
agttctttggtacaacattctttttgcctatctttgtaactacttgtgtgttgaaagctgatttttcaatggatttgacatcatatattatggtgtctaa |
37840108 |
T |
|
| Q |
316 |
tggtttactggtccttgtaactcacttggtcaaaatggcagcattgtttataaccgccctttg |
378 |
Q |
| |
|
||||||| ||||||| | || |||| ||||||||||| |||||| |||||||| || ||||| |
|
|
| T |
37840109 |
tggtttagtggtcctagcaattcacatggtcaaaatgacagcatgttttataactgctctttg |
37840171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 94 - 264
Target Start/End: Original strand, 37831745 - 37831920
Alignment:
| Q |
94 |
ggtttttgttcttggtattttgt-cagttaagattaatcaattatttggcttaggagctttcattttgggact----gtctgttcctgaaggacctcctt |
188 |
Q |
| |
|
||||||||||||||||||||| | | |||||||| ||||| |||| ||||||||||||| |||||||||| || ||||| |||||||||||||| |
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|
| T |
37831745 |
ggtttttgttcttggtatttttttcggttaagatagatcaagaatttatcttaggagctttcgttttgggactatttgtttgttcgtgaaggacctcctt |
37831844 |
T |
|
| Q |
189 |
taggatctgcattggttaagaagcttcagttctttggtacaacattatttttgcctatctttgtaactacttgtgt |
264 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
37831845 |
taacatctgtgttggttaagaagcttcagttctttggtccaacattatttttttctatctttgtatctacctgtgt |
37831920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 35299011 - 35298957
Alignment:
| Q |
176 |
gaaggacctcctttaggatctgcattggttaagaagcttcagttctttggtacaa |
230 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| | |||||||| |||| |
|
|
| T |
35299011 |
gaaggacctccattaggatctgcattggttaggaagcttgaattctttgggacaa |
35298957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 35299169 - 35299099
Alignment:
| Q |
18 |
taatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatt |
88 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||| | ||| ||||||| |||| ||||||| |
|
|
| T |
35299169 |
taatgttttggatcatcagacatactaaagaaggaagacctgtggatgatggttacatctatggtatcatt |
35299099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 5622550 - 5622628
Alignment:
| Q |
18 |
taatgttttggatcatcaaacgtacaccagaaggaagacctgtgaaggatagttacatttatgttatcatttcaatggt |
96 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||| | ||| ||||||| |||| |||||||| |||||| |
|
|
| T |
5622550 |
taatgttttggatcatcagacatactaaagaaggaagacctgtggatgatggttacatctatggtatcattttaatggt |
5622628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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