View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_29 (Length: 387)
Name: NF2703_low_29
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 143 - 377
Target Start/End: Original strand, 813996 - 814230
Alignment:
| Q |
143 |
cttctttctacaatgataattaagaagaatctcaaatctgaaatgccgaatcgcaaacggagaagattaacggaaaacgacgagttgactcagagaaaga |
242 |
Q |
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| T |
813996 |
cttctttctacaatgataattaagaagaatctcaaatctgaaatgccgaatcgcaaacggagaagattaacggaaaacgacgagttgactcagagaaaga |
814095 |
T |
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| Q |
243 |
agaaacttaacggaaataattttccgttaaatcttctcaacggtgcaattcccgttagttttactggtttactcggtgccaccgttgcgacagtggcacc |
342 |
Q |
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| T |
814096 |
agaaacttaacggaaataattttccgttaaatcttctcaacggtgcaattcccgttagttttactggtttactcggtgccaccgttgcgacagtggcacc |
814195 |
T |
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| Q |
343 |
gggtaatgataatagctgcttttccgttgtctctg |
377 |
Q |
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| T |
814196 |
gggtaatgataatagctgcttttccgttgtctctg |
814230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 813869 - 813932
Alignment:
| Q |
17 |
actctgtttctccaattctcgttattcaatttcaattt-caaacaaattagggtttatgttctg |
79 |
Q |
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| T |
813869 |
actctgtttctccaattctcgttattcaatttcaatttccaaacaaattagggtttatgttctg |
813932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 50810321 - 50810359
Alignment:
| Q |
41 |
ttcaatttcaatttcaaacaaattagggtttatgttctg |
79 |
Q |
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| T |
50810321 |
ttcaatttcaatttcaaaaaaattagggtttatgttctg |
50810359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 50865542 - 50865504
Alignment:
| Q |
41 |
ttcaatttcaatttcaaacaaattagggtttatgttctg |
79 |
Q |
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| T |
50865542 |
ttcaatttcaatttcaaaaaaattagggtttatgttctg |
50865504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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