View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2703_low_3 (Length: 821)

Name: NF2703_low_3
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2703_low_3
NF2703_low_3
[»] chr4 (9 HSPs)
chr4 (268-409)||(49117738-49117879)
chr4 (84-220)||(49117605-49117741)
chr4 (438-548)||(49117909-49118019)
chr4 (705-805)||(49120646-49120746)
chr4 (759-805)||(18133490-18133536)
chr4 (613-694)||(49118854-49118934)
chr4 (573-605)||(49118418-49118450)
chr4 (10-40)||(49117514-49117544)
chr4 (34-63)||(49117552-49117581)
[»] chr7 (1 HSPs)
chr7 (131-173)||(28665211-28665253)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 6e-67; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 268 - 409
Target Start/End: Original strand, 49117738 - 49117879
Alignment:
Q  268 caataaataatggttgagagcggaacacatgacgtgataaattcatgtatcgctctttcatgagaaatagaatttttcattcattaatatataaaaatgt 367  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49117738 caataaaaaatggttgagagcggaacacatgacgtgatagattcatgtatcgctctttcatgagaaatagcatttttcattcattaatatataaaaatgt 49117837  T
Q  368 ttcacaaagttctatgtacaaatttaacatattaatggtgcg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49117838 ttcacaaagttctatgtacaaatttaacatattaatggtgcg 49117879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 49117605 - 49117741
Alignment:
Q  84 ctctttgaaagagtttgtcgtccattaaagtcccgtaaaattcgaatgattaatctccgcaattgcacgcggaggatactcagtttacaccaaagattga 183  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  49117605 ctctttgaaagagtttgtcgtccattaaagtcccataaaatttgaaggattaatctccgcaattgcacgtggatgatactcagtttacaccgaagattga 49117704  T
Q  184 atataggaagtatatcacgaatgacaaacaaaccaat 220  Q
    |||||| |||||||||| |||||||||||||||||||    
T  49117705 atatagaaagtatatcatgaatgacaaacaaaccaat 49117741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 438 - 548
Target Start/End: Original strand, 49117909 - 49118019
Alignment:
Q  438 ttaacatatgtcattaaaatacaggagcacatattaaagaactcaatatgagtcaccgtgatctagactctgttggaataacattccatcatatatgcag 537  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  49117909 ttaacatgtgtcattaaaatacaggagcacatattaaagaattcaatatgagtcaccgtgatctcgactctgttggtataacattccatcatatatgcag 49118008  T
Q  538 gaatgcatgaa 548  Q
    |||||||||||    
T  49118009 gaatgcatgaa 49118019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 705 - 805
Target Start/End: Original strand, 49120646 - 49120746
Alignment:
Q  705 aaattaactactcacnnnnnnnaaaaggaaaaataactgctgaaatttatttttgggtacaaaaattaactgctcacttttattcacgtgaaaggggaaa 804  Q
    |||||||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49120646 aaattaactactcactttttttaaaaggaaaaataactgctaaaatttatttttgggtacaaaaattaactgctcacttttattcacgtgaaaggggaaa 49120745  T
Q  805 t 805  Q
    |    
T  49120746 t 49120746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 759 - 805
Target Start/End: Original strand, 18133490 - 18133536
Alignment:
Q  759 gggtacaaaaattaactgctcacttttattcacgtgaaaggggaaat 805  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18133490 gggtacaaaaattaactgctcacttttattcacgtgaaaggggaaat 18133536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 694
Target Start/End: Original strand, 49118854 - 49118934
Alignment:
Q  613 caatcctaatagtttttcatttaagtcaagttatannnnnnnnataaaatatttttctaacaacacttgaaaacgacaaaag 694  Q
    |||||||||||||||||||||||||||||| |||         |||||||  ||||||| ||||||||||||||||||||||    
T  49118854 caatcctaatagtttttcatttaagtcaagatat-ttttttttataaaatgattttctagcaacacttgaaaacgacaaaag 49118934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 605
Target Start/End: Original strand, 49118418 - 49118450
Alignment:
Q  573 aaaagtatttttagaaaaaagttaatcctcctt 605  Q
    |||||||||||||||||||||||||||||||||    
T  49118418 aaaagtatttttagaaaaaagttaatcctcctt 49118450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 49117514 - 49117544
Alignment:
Q  10 attatacttgaggaagtcttgcgtgtcacaa 40  Q
    |||||||||||||||||||||||||||||||    
T  49117514 attatacttgaggaagtcttgcgtgtcacaa 49117544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 63
Target Start/End: Original strand, 49117552 - 49117581
Alignment:
Q  34 gtcacaaaatttaggcacaattacatattt 63  Q
    ||||||||||||||||||||||||||||||    
T  49117552 gtcacaaaatttaggcacaattacatattt 49117581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 28665211 - 28665253
Alignment:
Q  131 gattaatctccgcaattgcacgcggaggatactcagtttacac 173  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||    
T  28665211 gattagtctccgcagttgcacgcggaggatacccagtttacac 28665253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University