View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_30 (Length: 370)
Name: NF2703_low_30
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_30 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 301
Target Start/End: Original strand, 36936967 - 36937248
Alignment:
| Q |
20 |
ctagttaggaagaaaacctagacctttgaaggcaaaaactttgtataaattaatcaaatcactggttccatatatagctagcccccacagtttcaaccat |
119 |
Q |
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| T |
36936967 |
ctagttaggaagaaaacctagacctttgaaggcaaaaactttgtataaattaatcaaatcactggttccatatatagctagcccccacagtttcaaccat |
36937066 |
T |
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| Q |
120 |
agttgaagctaaccacgtcatcgtctagtaaatttaagagtgatcagtgatgtgatcatggtttgatacttaggagagatgcatgactactattcatcat |
219 |
Q |
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| T |
36937067 |
agttgaagctaaccacgtcatcgtctagtaaatttaagagtgatcagtgatgtgatcatggtttgatacttaggagagatgcatgactactattcatcat |
36937166 |
T |
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| Q |
220 |
aaaagatgaagatgaagaaagaggagaaagattgggataaagagaaaaggtgtggaatctaacgtgaataagctatcataat |
301 |
Q |
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| T |
36937167 |
aaaagatgaagatgaagaaagaggagaaagattgggataaagagaaaaggtgtggaatctaacgtgaataagctatcataat |
36937248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 36937263 - 36937299
Alignment:
| Q |
298 |
taatccaatgtttgttgttaacaagactatgatggcc |
334 |
Q |
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| T |
36937263 |
taatccaatgtttgttgttaacaagactatgatggcc |
36937299 |
T |
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