View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_31 (Length: 368)
Name: NF2703_low_31
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 41234620 - 41234969
Alignment:
| Q |
1 |
agagaagataagagtgagttaaattgtttgatgctactatccaaagttggtgaaacaaaagagcctaatacattgaaagaatgtggttttaagtgcaaaa |
100 |
Q |
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| T |
41234620 |
agagaagataagagtgagttaaattgtttgatgctactatccaaagttggtgaaacaaaagagcctaatacattgaaagaatgtggttttaagtgcaaaa |
41234719 |
T |
|
| Q |
101 |
catgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaactcatgtacaagttaccaaacatgaaaccaaa |
200 |
Q |
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| T |
41234720 |
catgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaactcatgtacaagttaccaaacatgaaaccaaa |
41234819 |
T |
|
| Q |
201 |
gatgcatccatgccctatttgtggacttgagttttccattggacaagctcttggtggccacatgagaaagcataatagtagcttttccatcttcnnnnnn |
300 |
Q |
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| T |
41234820 |
gatgcatccatgccctatttgtggacttgagttttccattggacaagctcttggtggccacatgagaaagcataatagtagtttttccatcttcaaaaaa |
41234919 |
T |
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| Q |
301 |
nnnnnnnnnn-ccattgtgaaaggttgaatttttgcttggacttgaactt |
349 |
Q |
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| T |
41234920 |
tcaaaaaaagaccattgtgaaaggttgaatttttgcttggacttgaactt |
41234969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 40689687 - 40689761
Alignment:
| Q |
94 |
tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaa |
168 |
Q |
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| T |
40689687 |
tgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaa |
40689761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 40243844 - 40243776
Alignment:
| Q |
94 |
tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagaga |
162 |
Q |
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| T |
40243844 |
tgcaaaacgtgcaacaaaaaattctcatcttttcaagcccttggtggccatagggctagccacaagaga |
40243776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 9612909 - 9612877
Alignment:
| Q |
126 |
tcaagctttaggtggccatagagcaagtcacaa |
158 |
Q |
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| T |
9612909 |
tcaagcattaggtggccatagagcaagtcacaa |
9612877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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