View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_34 (Length: 360)
Name: NF2703_low_34
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 2511822 - 2511498
Alignment:
| Q |
18 |
gatattggacaacgaggattttgagtcttcagacctagctgcctcgccaactggatatgatgcctttgatatataggataaatcttgttttacggagcct |
117 |
Q |
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| T |
2511822 |
gatattggacaacgaggattttgagtcgtcagacatagctgcctcgccaactggatatgatgcctttgatatataggataaatcttgttttacggagcct |
2511723 |
T |
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| Q |
118 |
tctgttgcaaattccgtatccaaagttttcatccccgccaattccagttttgcaggttcatctttcgccaaattagactcatccatttgatgagatgaaa |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2511722 |
tctgttgcaaattccgtatccaaagtttccatccccgccaattccagttttgcaggttcatctttcgccaaattagactcatccatttgatgagatgaaa |
2511623 |
T |
|
| Q |
218 |
tcactgcattttcgttcttcaaactacagccttcagttgcaaattccacgtcgaaagtctccaaaataggcacatcgttttcattcatcaaactacagct |
317 |
Q |
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|||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2511622 |
tcacagcatttttgttcttcaaactacagtcttcagttgcaaattccacgtcgaaagtctccaaaataggcacatcgttttcgttcatcaaactacagct |
2511523 |
T |
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| Q |
318 |
ttcagttgcaaatgccacatcgaac |
342 |
Q |
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| T |
2511522 |
ttcagttgcaaattccacatcgaac |
2511498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 2495659 - 2495392
Alignment:
| Q |
18 |
gatattggacaacgaggattttgagtcttcagacctagctgcctcgccaactggatatgatgcctttgatatataggataaatcttgttttacggagcct |
117 |
Q |
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| T |
2495659 |
gatagtggacaaagaggattttgagtcatcaggcgtagctgcctcgccatctggatacgatgcctttgatatataggataaatcttgttttacggcgcct |
2495560 |
T |
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| Q |
118 |
tctgttgcaaattccgtatccaaagttttcatccccgccaattccagttttgcaggttcatctttcgccaaattagactcatccatttgatgagatgaaa |
217 |
Q |
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||||||||||||||| |||||||||||| ||| ||||| ||| |||||||| |||||||||| || |||||| ||||||||||||||||||||||||| | |
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| T |
2495559 |
tctgttgcaaattccatatccaaagtttccatacccgcgaatcccagtttttcaggttcatcgtttgccaaagtagactcatccatttgatgagatgata |
2495460 |
T |
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| Q |
218 |
tcactgcattttcgttcttcaaactacagccttcagttgcaaattccacgtcgaaagtctccaaaata |
285 |
Q |
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| T |
2495459 |
tcactgcattttcgttcttcaaactacagttttcagttgcaaattccacatctaaagtctccaaaata |
2495392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 2511545 - 2511482
Alignment:
| Q |
226 |
ttttcgttcttcaaactacagccttcagttgcaaattccacgtcgaaagtctccaaaataggca |
289 |
Q |
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| T |
2511545 |
ttttcgttcatcaaactacagctttcagttgcaaattccacatcgaacgtctccaaaataggca |
2511482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 2511430 - 2511354
Alignment:
| Q |
116 |
cttctgttgcaaattccgtatccaaagttttcatccccgccaattccagttttgcaggttcatctttcgccaaatta |
192 |
Q |
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|||| ||||||||||| ||||||| || || || || ||||||||| ||||||||||||||| || ||||||||| |
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| T |
2511430 |
cttcagttgcaaattctgtatccatagattcgatgccaaccaattccacttttgcaggttcatcgttggccaaatta |
2511354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 4258177 - 4257915
Alignment:
| Q |
18 |
gatattggacaacgaggattttgagtcttcagacctagctgcctcgccaactggatatgatgcctttgatatataggataaatcttgttttacggagcct |
117 |
Q |
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|||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
4258177 |
gatattggacaacgaggattttgagttatcagacatagctacctcgccaactggagccagtgcctctgatatataagataaatcttgttttacggagcct |
4258078 |
T |
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| Q |
118 |
tctgttgcaaattccgtatccaaagttttcatccccgccaattccagttttgcaggttcatctttcgccaaattagactcatccatttgatgagatgaaa |
217 |
Q |
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||||||| ||||||| |||| |||||| ||| || |||| |||||| ||||||| | || || |||||| |||||||||| ||||||| |||| | | |
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| T |
4258077 |
tctgttgtaaattccatatctgaagtttccataccgaccaaggccagttctgcaggtccgtcgtttgccaaagtagactcatcaatttgataagataaga |
4257978 |
T |
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| Q |
218 |
tcactgcattttcgttcttcaaactacagccttcagttgcaaattccacgtcgaaagtctcca |
280 |
Q |
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|| |||||||||||||||| |||||||||| ||||||||| |||||| | || |||||||||| |
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| T |
4257977 |
tctctgcattttcgttctttaaactacagctttcagttgccaattccgcatccaaagtctcca |
4257915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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