View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_36 (Length: 351)
Name: NF2703_low_36
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 23644341 - 23644021
Alignment:
| Q |
14 |
atcatcatccgttatacaattgataagctctaaagtagataaagagaatataataatattaatagattgagataaaatattgtgtatgaacaaaaaa--c |
111 |
Q |
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| T |
23644341 |
atcatcatccgttatacaattgataagctctaaagtagataaagagaatataataatattaataaaatgagataaaatattgtgtatgaacaaaaaaaac |
23644242 |
T |
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| Q |
112 |
taaagaagaacatttaaaaaggacgnnnnnnntagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaataaatat |
211 |
Q |
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| T |
23644241 |
taaataa---catttaaaaaggacaaaaaaaatagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaataaatat |
23644145 |
T |
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| Q |
212 |
tcttaagagttttagccatatttttcctgtctttacatgtaactaatagaacatagtttgctcactttatagtgtgttaagcgcatgttgtgcttgaaat |
311 |
Q |
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| T |
23644144 |
tcttaagagttttagccatatttttcctgtctttacatgtaactaatagaacatagtttgctcactttatagtgtgttaagcgcatgttgtgcttgaaat |
23644045 |
T |
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| Q |
312 |
aatcaaatatttttagcatttaag |
335 |
Q |
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| T |
23644044 |
aatcaaatatttttagcatttaag |
23644021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 144 - 334
Target Start/End: Complemental strand, 23654001 - 23653812
Alignment:
| Q |
144 |
tagcttaccaccgtcaacgttcattacaacaagaaatatggaaagaaatataattatggaataaatattcttaagagttttagccatatttttcctgtct |
243 |
Q |
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| T |
23654001 |
tagcttaccaccgtcaacgttcattacaacaagaaatggagaaagaaatataattatagaataaataaacttgaatgttttaaccatattttt-ctgcct |
23653903 |
T |
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| Q |
244 |
ttacatgtaactaatagaacatagtttgctcactttatagtgtgttaagcgcatgttgtgcttgaaataatcaaatatttttagcatttaa |
334 |
Q |
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| T |
23653902 |
ttatatataacaaatttaatacagtttgctctttttatagtgtattaagtggatggtgtgctcaaattaatgaaatatttttagcacttaa |
23653812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 23618410 - 23618471
Alignment:
| Q |
174 |
aagaaatatggaaagaaatataattatggaataaatattcttaagagttttagccatatttt |
235 |
Q |
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| T |
23618410 |
aagaaataaggaaagaaatataatcatagcatacacaaacttaagagttttagccatatttt |
23618471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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