View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_38 (Length: 336)
Name: NF2703_low_38
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 28472630 - 28472320
Alignment:
| Q |
18 |
acaatcacaaacctaggacacccccacacacaatatcattgttgtgttctgccctatctcatgtatttgcttaaatatctcacttctcttaccattttat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28472630 |
acaatcacaaacctaggacacccccacacacaatatcattgttgtgttctgccctatctcatgtatttgcttaaatatctcacttctcttaccattttat |
28472531 |
T |
|
| Q |
118 |
atttccttagattcaattcactatattttctataattcagttacaatcttttcttacatctcttcctatataaacaagaaacaactcaaaaagtttccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28472530 |
atttccttagattcaattcactatattttctataattcagttacaatcttttcttacatctcttcctatataaacaagaaacaactcaaaaagtttccat |
28472431 |
T |
|
| Q |
218 |
ggattccaattcaaagtgctcaagatttcaaatccctcttggatcaatggcaagaagtatgtttttcaaagcattacttcttgcctctgctatttccatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28472430 |
ggattccaattcaaagtgctcaagatttcaaatccctcttggatcaatggcaagaagtatgtttttcaaagcattacttcttgcctctgctatttccatc |
28472331 |
T |
|
| Q |
318 |
gtttctctgct |
328 |
Q |
| |
|
||||||||||| |
|
|
| T |
28472330 |
gtttctctgct |
28472320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University