View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2703_low_40 (Length: 326)

Name: NF2703_low_40
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2703_low_40
NF2703_low_40
[»] chr6 (28 HSPs)
chr6 (87-311)||(1502551-1502775)
chr6 (87-197)||(13011260-13011370)
chr6 (27-87)||(2272383-2272443)
chr6 (87-187)||(13503766-13503866)
chr6 (87-198)||(3988656-3988766)
chr6 (87-190)||(12459238-12459341)
chr6 (98-197)||(20226133-20226232)
chr6 (98-197)||(22120117-22120216)
chr6 (87-198)||(32193940-32194050)
chr6 (87-197)||(21271315-21271425)
chr6 (92-147)||(17828418-17828473)
chr6 (87-187)||(3847782-3847882)
chr6 (93-147)||(12588661-12588715)
chr6 (92-190)||(17552166-17552264)
chr6 (87-188)||(32619746-32619847)
chr6 (123-187)||(31233544-31233608)
chr6 (87-132)||(12322861-12322906)
chr6 (121-198)||(16127921-16127998)
chr6 (87-147)||(9940778-9940838)
chr6 (87-197)||(32429407-32429517)
chr6 (87-197)||(4850418-4850528)
chr6 (87-182)||(8957898-8957995)
chr6 (87-182)||(8961362-8961459)
chr6 (124-197)||(12321490-12321561)
chr6 (87-188)||(18737009-18737110)
chr6 (87-147)||(577192-577252)
chr6 (87-165)||(13597898-13597976)
chr6 (97-165)||(29400075-29400143)
[»] chr3 (25 HSPs)
chr3 (5-87)||(18202151-18202233)
chr3 (87-198)||(30315440-30315551)
chr3 (87-197)||(36844652-36844762)
chr3 (98-198)||(38141091-38141191)
chr3 (107-192)||(48901857-48901942)
chr3 (87-192)||(48903416-48903521)
chr3 (87-190)||(42072115-42072218)
chr3 (87-199)||(45460786-45460900)
chr3 (97-196)||(50646052-50646151)
chr3 (87-198)||(3985981-3986090)
chr3 (87-198)||(27067736-27067840)
chr3 (98-161)||(40487969-40488032)
chr3 (87-182)||(7230819-7230914)
chr3 (98-162)||(30680768-30680832)
chr3 (123-198)||(11337531-11337606)
chr3 (87-198)||(19373716-19373827)
chr3 (109-188)||(31190629-31190707)
chr3 (87-198)||(42886869-42886980)
chr3 (87-153)||(9189389-9189455)
chr3 (108-190)||(22857207-22857289)
chr3 (92-197)||(30934718-30934824)
chr3 (87-129)||(40717648-40717690)
chr3 (98-167)||(8817282-8817351)
chr3 (97-190)||(44064382-44064475)
chr3 (125-186)||(40717293-40717354)
[»] chr1 (30 HSPs)
chr1 (98-197)||(29568037-29568136)
chr1 (92-197)||(26594980-26595085)
chr1 (87-190)||(8894933-8895036)
chr1 (27-87)||(4009714-4009774)
chr1 (98-198)||(18794452-18794552)
chr1 (87-196)||(44556981-44557090)
chr1 (98-162)||(8989585-8989649)
chr1 (87-186)||(25560794-25560893)
chr1 (87-197)||(5109-5218)
chr1 (87-190)||(5225747-5225846)
chr1 (87-147)||(7191167-7191227)
chr1 (87-161)||(16757145-16757219)
chr1 (87-153)||(31699244-31699310)
chr1 (87-197)||(34032001-34032111)
chr1 (87-144)||(28538335-28538392)
chr1 (87-190)||(14373341-14373444)
chr1 (98-182)||(14607546-14607628)
chr1 (88-190)||(38947725-38947826)
chr1 (137-187)||(44938503-44938553)
chr1 (92-182)||(46270949-46271038)
chr1 (97-197)||(26352002-26352102)
chr1 (87-136)||(27209119-27209168)
chr1 (128-197)||(27209536-27209605)
chr1 (132-197)||(28410729-28410794)
chr1 (97-198)||(30293466-30293567)
chr1 (87-144)||(33622322-33622379)
chr1 (87-160)||(50249430-50249503)
chr1 (92-182)||(2610762-2610848)
chr1 (97-197)||(12484549-12484649)
chr1 (98-142)||(33694388-33694432)
[»] chr7 (33 HSPs)
chr7 (96-189)||(4268871-4268964)
chr7 (27-87)||(35345322-35345382)
chr7 (94-167)||(4268790-4268863)
chr7 (87-198)||(47461285-47461395)
chr7 (87-187)||(28289345-28289445)
chr7 (87-193)||(34012587-34012693)
chr7 (87-197)||(42286028-42286138)
chr7 (92-188)||(19303314-19303410)
chr7 (87-141)||(7335411-7335465)
chr7 (87-182)||(48843683-48843780)
chr7 (105-198)||(30312683-30312776)
chr7 (98-167)||(40753371-40753439)
chr7 (87-147)||(40339589-40339649)
chr7 (87-197)||(37490918-37491027)
chr7 (92-190)||(6563336-6563434)
chr7 (87-172)||(45499759-45499845)
chr7 (87-190)||(18270698-18270801)
chr7 (87-143)||(21819413-21819469)
chr7 (92-167)||(24780259-24780334)
chr7 (91-197)||(25055916-25056020)
chr7 (92-147)||(29636187-29636242)
chr7 (97-172)||(47187792-47187867)
chr7 (88-190)||(6747347-6747449)
chr7 (87-197)||(12977607-12977717)
chr7 (87-197)||(18292455-18292565)
chr7 (87-188)||(12983074-12983175)
chr7 (97-197)||(715784-715884)
chr7 (87-198)||(2297163-2297274)
chr7 (155-198)||(39135999-39136043)
chr7 (97-186)||(8292990-8293079)
chr7 (149-187)||(24793280-24793318)
chr7 (87-197)||(34274914-34275024)
chr7 (87-192)||(10476266-10476375)
[»] chr5 (24 HSPs)
chr5 (87-198)||(11977718-11977829)
chr5 (92-197)||(1309271-1309376)
chr5 (87-188)||(13974404-13974505)
chr5 (27-87)||(39343870-39343930)
chr5 (87-198)||(843148-843259)
chr5 (87-190)||(34534489-34534592)
chr5 (97-190)||(14161819-14161913)
chr5 (92-197)||(21634246-21634351)
chr5 (92-197)||(21642493-21642598)
chr5 (87-197)||(7736504-7736615)
chr5 (87-196)||(27797908-27798015)
chr5 (89-147)||(11195207-11195265)
chr5 (107-196)||(4911023-4911112)
chr5 (89-187)||(28591547-28591643)
chr5 (97-198)||(10344854-10344955)
chr5 (87-187)||(36165017-36165115)
chr5 (87-167)||(38370002-38370082)
chr5 (87-198)||(34381712-34381819)
chr5 (96-153)||(27557777-27557834)
chr5 (87-160)||(32158662-32158735)
chr5 (122-198)||(7579511-7579587)
chr5 (97-188)||(15166934-15167024)
chr5 (87-137)||(38362110-38362160)
chr5 (87-190)||(9065583-9065683)
[»] chr2 (25 HSPs)
chr2 (87-190)||(8540169-8540272)
chr2 (87-190)||(37038689-37038792)
chr2 (87-197)||(11188162-11188272)
chr2 (87-197)||(33056021-33056131)
chr2 (87-197)||(27964140-27964247)
chr2 (88-167)||(44712176-44712255)
chr2 (110-197)||(43971929-43972016)
chr2 (82-197)||(9391505-9391621)
chr2 (97-188)||(14833680-14833772)
chr2 (87-186)||(4658156-4658254)
chr2 (87-182)||(10195805-10195900)
chr2 (87-198)||(29412114-29412225)
chr2 (102-162)||(4469591-4469650)
chr2 (98-190)||(19164495-19164587)
chr2 (92-197)||(15083081-15083182)
chr2 (97-197)||(45423748-45423848)
chr2 (98-162)||(11132692-11132754)
chr2 (98-188)||(7872700-7872788)
chr2 (92-182)||(36685670-36685759)
chr2 (87-197)||(40608519-40608628)
chr2 (98-147)||(18579303-18579352)
chr2 (98-198)||(45301896-45301994)
chr2 (137-197)||(681679-681739)
chr2 (87-186)||(32022834-32022933)
chr2 (87-143)||(34455822-34455878)
[»] chr4 (24 HSPs)
chr4 (87-197)||(47817869-47817979)
chr4 (87-197)||(41496335-41496445)
chr4 (87-187)||(30261389-30261489)
chr4 (92-188)||(44651023-44651119)
chr4 (102-190)||(19451128-19451216)
chr4 (87-182)||(47458319-47458413)
chr4 (87-197)||(44061124-44061234)
chr4 (87-182)||(10573085-10573181)
chr4 (92-147)||(52162239-52162294)
chr4 (89-162)||(11364358-11364431)
chr4 (87-198)||(36558217-36558326)
chr4 (97-188)||(6991188-6991279)
chr4 (87-198)||(7905922-7906033)
chr4 (87-188)||(50203204-50203305)
chr4 (98-198)||(38510171-38510271)
chr4 (87-198)||(620091-620202)
chr4 (92-179)||(25123557-25123644)
chr4 (98-197)||(34413463-34413562)
chr4 (87-197)||(4505456-4505566)
chr4 (91-145)||(33034181-33034235)
chr4 (98-186)||(56460227-56460313)
chr4 (87-190)||(25231295-25231398)
chr4 (97-204)||(37624686-37624793)
chr4 (87-147)||(46392030-46392089)
[»] scaffold0565 (1 HSPs)
scaffold0565 (87-187)||(9877-9977)
[»] chr8 (26 HSPs)
chr8 (95-194)||(6115920-6116019)
chr8 (98-181)||(15227711-15227794)
chr8 (87-187)||(9812303-9812403)
chr8 (87-197)||(34796595-34796704)
chr8 (27-84)||(18290784-18290841)
chr8 (87-187)||(40399800-40399900)
chr8 (92-198)||(13367862-13367966)
chr8 (92-147)||(13496373-13496428)
chr8 (87-186)||(15750253-15750352)
chr8 (87-182)||(43969980-43970074)
chr8 (92-198)||(34156670-34156776)
chr8 (87-190)||(41679442-41679542)
chr8 (92-162)||(2375794-2375864)
chr8 (127-197)||(31233857-31233927)
chr8 (108-197)||(515053-515142)
chr8 (140-197)||(24245130-24245187)
chr8 (87-198)||(396136-396247)
chr8 (125-197)||(12339880-12339952)
chr8 (87-197)||(6374543-6374651)
chr8 (106-197)||(29312105-29312196)
chr8 (87-162)||(42179225-42179300)
chr8 (87-197)||(43724502-43724612)
chr8 (112-186)||(33746063-33746137)
chr8 (87-198)||(39765782-39765893)
chr8 (87-190)||(15160376-15160479)
chr8 (87-189)||(5295327-5295428)
[»] scaffold0521 (1 HSPs)
scaffold0521 (27-84)||(4929-4986)
[»] scaffold0300 (1 HSPs)
scaffold0300 (87-190)||(4695-4796)
[»] scaffold0983 (1 HSPs)
scaffold0983 (87-186)||(611-709)
[»] scaffold0332 (1 HSPs)
scaffold0332 (97-197)||(3733-3833)
[»] scaffold0026 (1 HSPs)
scaffold0026 (97-190)||(4281-4374)
[»] scaffold0136 (1 HSPs)
scaffold0136 (87-187)||(9675-9772)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 87 - 311
Target Start/End: Complemental strand, 1502775 - 1502551
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1502775 agttaattaagataatttggtaaaataacatctctatttcttttaatcaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 1502676  T
Q  187 cggaaggagtatcatatataatatggccattgaatgaccaaatttaccataggaaagcataatttagtgtccttagaaaaaatatgcaaatgatttggct 286  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1502675 cggaaggagtatcatatataatatggtcattgaacgaccaaatttaccataggaaagcataatttagtgtccttagaaaaaatatgcaaatgatttggct 1502576  T
Q  287 cacatgttgaaataaatgaggaaaa 311  Q
    |||||||||||||||||||||||||    
T  1502575 cacatgttgaaataaatgaggaaaa 1502551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 13011370 - 13011260
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||| ||||  ||||||||||||    
T  13011370 agttgattaagataatttggtaaaataacatctctctttcttttaattaatgcatttcttaatatgtgtgtaaaaatcttaaacgacgttcattttgaaa 13011271  T
Q  187 cggaaggagta 197  Q
    | || ||||||    
T  13011270 cagagggagta 13011260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 2272443 - 2272383
Alignment:
Q  27 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2272443 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 2272383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 13503866 - 13503766
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||| | | ||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||| |||||||||    
T  13503866 agtttattaggataatttggtaaaataacatttctctttcttttaattaatgcatttcttaatatgtgtgtaaaaatcttaaacgacatttattttgaaa 13503767  T
Q  187 c 187  Q
    |    
T  13503766 c 13503766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 3988766 - 3988656
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||||| |||||||||| | ||||| ||||||||||||| |||| ||||||||| |||    
T  3988766 agttgattatgataatttggtaaaataacatctctctttcttttaatt-atgcatttctcaatatgtgtgtaaaaatcttaaacgacattcattttaaaa 3988668  T
Q  187 cggaaggagtat 198  Q
    | || |||||||    
T  3988667 cagagggagtat 3988656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 12459341 - 12459238
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||| |||||||| |||| || | ||||||||| |||    
T  12459341 agttgattaggataatttggtaaaataatatctttctttcttttaattaatgtatttcttagtatgtgtgtaaaaaccttaaacaacattcatttttaaa 12459242  T
Q  187 cgga 190  Q
    ||||    
T  12459241 cgga 12459238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 20226232 - 20226133
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||||||| ||| | || ||||| |||| |||| ||||||||||||| ||||||||||    
T  20226232 ataatttggtaaaataacatctctctttctttaaattaatgcatttcttaatatatgtggaaaaaccttaaacgacattcattttgaaagggaaggagta 20226133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 22120216 - 22120117
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||||||||| | ||||||| ||||||||||||||||| ||| | || ||||| |||| |||| ||||||||||||| ||||||||||    
T  22120216 ataatttggtaaaataacatctctctttctttaaattaatgcatttcttaatatatgtggaaaaaccttaaacgacattcattttgaaagggaaggagta 22120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 32193940 - 32194050
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||| ||||| ||||||||| ||| | |||||||| |||| |||| |||||||||||||    
T  32193940 agttgattaggataatttggtaaaataacatctctattt-ttttatttaatacatttcttaatatatgtgtaaaaaccttaaacgacattcattttgaaa 32194038  T
Q  187 cggaaggagtat 198  Q
    ||||| ||||||    
T  32194039 cggaaagagtat 32194050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 21271425 - 21271315
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||| |||||||||||||||||| | ||| |||||| |||||||||||||| ||||| |||||||| |||| |||| |||||||||||||    
T  21271425 agttgattaggatactttggtaaaataacatctctctttattttaaataatgcatttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaa 21271326  T
Q  187 cggaaggagta 197  Q
    | || ||||||    
T  21271325 cagagggagta 21271315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 17828418 - 17828473
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17828418 attaagataatttggtaaaataacatctttctttcttttaattaatgcatttctta 17828473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 3847782 - 3847882
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| ||||||||||||  ||||||||||||| || |||||||||||||||  |||||||| ||||  ||||||| ||||| |||| |||||||||||||    
T  3847782 agttgattaagataattctgtaaaataacatccttctttcttttaattaatttatttcttaatatgcgtgtaaaagtcttaaacgacattcattttgaaa 3847881  T
Q  187 c 187  Q
    |    
T  3847882 c 3847882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 12588661 - 12588715
Alignment:
Q  93 ttaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||||||||||||||||||||| |||| | |||||||||||||||||||||||||    
T  12588661 ttaagataatttggtaaaataaaatctctctttcttttaattaatgcatttctta 12588715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 17552264 - 17552166
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    |||| |||||||||||||||| |||||| | |||||||||||||||| |||| ||| | ||| ||||||||  | | |||| |||||||||||||||||    
T  17552264 attaggataatttggtaaaattacatctctctttcttttaattaatgtattttttaatctgtgtgtaaaaacttaaaacgacattcattttgaaacgga 17552166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 32619847 - 32619746
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||||||||||||  ||| ||||||| | | |||||||||||||||| |||||||| ||||| |||||||||| || |||  || ||||||||||    
T  32619847 agttgattaagataatttaataatataacatttctctttcttttaattaatgtatttcttaatatgtgtgtaaaaatcataaacgtcatgcattttgaaa 32619748  T
Q  187 cg 188  Q
    ||    
T  32619747 cg 32619746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 31233608 - 31233544
Alignment:
Q  123 tttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaac 187  Q
    |||||||||||||||| |||||||| ||||| |||||||| |||| | |||||||||||||||||    
T  31233608 tttcttttaattaatgtatttcttaatatgtgtgtaaaaaccttaaaagatattcattttgaaac 31233544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 12322906 - 12322861
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaa 132  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||    
T  12322906 agttaattaggataatttggtaaaataacatctctatttcttttaa 12322861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 16127998 - 16127921
Alignment:
Q  121 tatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagtat 198  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  ||| || | ||| || ||||||||||| ||||||    
T  16127998 tatttcttttaattaatgcatttcttaatatatatgtaaaaactttaaaccacatttatgttgaaacggaaagagtat 16127921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 9940778 - 9940838
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||| || ||||||||||||    
T  9940778 agttgattaggataatttggtaaaataacatctctctttcttttagttgatgcatttctta 9940838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 32429407 - 32429517
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| |||||||||||||||||||| ||| | | ||||||||||| | ||||||||||| ||||| |||||| | || | || | | ||||||||||    
T  32429407 agttaataaagataatttggtaaaataatcat-tctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacaacactcattttgaa 32429505  T
Q  186 acggaaggagta 197  Q
    ||||| ||||||    
T  32429506 acggagggagta 32429517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 4850528 - 4850418
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | |||||||||||    
T  4850528 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaa 4850429  T
Q  187 cggaaggagta 197  Q
    || | ||||||    
T  4850428 cgaatggagta 4850418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 8957898 - 8957995
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttatta--tgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||||||| ||||||| | | |||| ||||||||||| |||||||| ||  ||| |||||||| |||| |||| |||||||||    
T  8957898 agttgattaggataatttggtaagataacatatctctttcatttaattaatgtatttcttaatatgtgtgtgtaaaaaccttaaacgacattcatttt 8957995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 8961459 - 8961362
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttatta--tgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||||||| ||||||| | | |||| ||||||||||| |||||||| ||  ||| |||||||| |||| |||| |||||||||    
T  8961459 agttgattaggataatttggtaagataacatatctctttcatttaattaatgtatttcttaatatgtgtgtgtaaaaaccttaaacgacattcatttt 8961362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 12321561 - 12321490
Alignment:
Q  124 ttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||||||| ||| ||| | ||||||  ||||| |||||||| ||||| ||||||||||||||    
T  12321561 ttcttttaattaatgcattttttaatatatttgtaaa--tcttaaacgatatttattttaaaacggaaggagta 12321490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 18737110 - 18737009
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||||| ||||||||| |||| || | ||| | ||||||||||||||||||||| ||| |||||  |||||||  ||| |||| ||| ||||| |||    
T  18737110 agttaattaggataatttgataaattagcgtctctgtttcttttaattaatgcattttttaatatgtgcgtaaaaactttaaacgacattaattttcaaa 18737011  T
Q  187 cg 188  Q
    ||    
T  18737010 cg 18737009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 577192 - 577252
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| |||| |||||||| |||||||||||| | | ||| |||||||||||||||||||||    
T  577192 agttgattaggataatttagtaaaataacatttctctttattttaattaatgcatttctta 577252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 13597976 - 13597898
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatct 165  Q
    ||||||| ||||||||||||||||||||||  | | ||||||||| |   | ||||||||| ||||| |||||||||||    
T  13597976 agttaataaagataatttggtaaaataacaattctctttcttttattccttacatttcttaatatgtgtgtaaaaatct 13597898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 165
Target Start/End: Original strand, 29400075 - 29400143
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatct 165  Q
    |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| ||||    
T  29400075 gataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaagatct 29400143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 18202233 - 18202151
Alignment:
Q  5 atcctcgttgccggagttagggcctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 87  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18202233 atcctggttgccggagttagggcctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 18202151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 30315440 - 30315551
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||| ||||| |  |||| |||| |||||||||||||    
T  30315440 agttgattaggataatttggtaaaataacatctctctttctcttaattaatgcatttcttaatatgtgtgtaacagccttaaacgacattcattttgaaa 30315539  T
Q  187 cggaaggagtat 198  Q
    |||| |||||||    
T  30315540 cggagggagtat 30315551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 36844762 - 36844652
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||| |||| | ||||| ||||||||||||||||||| ||||| | |||||| |||| |||| |||||||||||||    
T  36844762 agttgattaggataatttggtaaaataatatctctctttctgttaattaatgcatttcttaatatgtgtctaaaaaccttaaacgacattcattttgaaa 36844663  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  36844662 cggagggagta 36844652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 38141091 - 38141191
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||| ||||||||||  ||| |||| ||||||||| ||||  ||||||||    
T  38141091 ataatttggtaaaataacatctctatttcttttaattaatacattttttaatatatatgtaaaaactttatacgacattcattttaaaacataaggagta 38141190  T
Q  198 t 198  Q
    |    
T  38141191 t 38141191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 48901857 - 48901942
Alignment:
Q  107 taaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaag 192  Q
    |||||||| || ||| ||||||||||||||||||||||||| |||||||||||||| |||| |||| | ||||||| |||||||||    
T  48901857 taaaataatatatttctttcttttaattaatgcatttcttaatatgtatgtaaaaaacttaaacgacactcattttaaaacggaag 48901942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 48903416 - 48903521
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| ||||| |||||||| |||||||| || | | ||||||||||||||||||||||||| |||||||||||||| |||| |||| | ||||||  |||    
T  48903416 agttgattaaaataatttgataaaataatatatctctttcttttaattaatgcatttcttaatatgtatgtaaaaaacttaaacgacactcatttaaaaa 48903515  T
Q  187 cggaag 192  Q
    ||||||    
T  48903516 cggaag 48903521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 42072115 - 42072218
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||| |||||||||||| | | |||||||||||||||  |||||||| ||||| ||||||||  ||| |||| |||||||||||||    
T  42072115 agttgattatgataatttagtaaaataacatatctctttcttttaattaatatatttcttaatatgtgtgtaaaaacattatacgacattcattttgaaa 42072214  T
Q  187 cgga 190  Q
    ||||    
T  42072215 cgga 42072218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 45460786 - 45460900
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttatt--atgtatgtaaaaatcttagacgatattcattttga 184  Q
    ||||||| | ||||||||||||||||||||  |||||||||||||||   ||||||||||| |  |||| ||||||||||||| ||||  ||||||||||    
T  45460786 agttaataaggataatttggtaaaataacaattttatttcttttaatctttgcatttcttaatacatgtgtgtaaaaatcttaaacgacgttcattttga 45460885  T
Q  185 aacggaaggagtatc 199  Q
    || ||| ||||||||    
T  45460886 aatggagggagtatc 45460900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 50646151 - 50646052
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagt 196  Q
    ||||||||| |  |||||||||| | ||||||||||||||| ||||| ||| ||||| ||||||||||||| |||| | ||||||| |||||||||||||    
T  50646151 gataatttgatcgaataacatctctctttcttttaattaatacattttttaatatgtgtgtaaaaatcttaaacgacactcattttaaaacggaaggagt 50646052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 3985981 - 3986090
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||| |  | | ||||||||||| | |||||||||||  |||| |||||||| |||| |||| |||||||||||||    
T  3985981 agttaataaggataatttggtaaaataaaaattctctttcttttaatcattgcatttctta--atgtgtgtaaaaaccttaaacgacattcattttgaaa 3986078  T
Q  187 cggaaggagtat 198  Q
    | ||||||||||    
T  3986079 ctgaaggagtat 3986090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 27067736 - 27067840
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||| ||||||||||     |||||||||||||||||||||  |||| |||||||| |||| |||| | ||||||| |||    
T  27067736 agttgattaggataatttggtaaattaacatcttt-----ttttaattaatgcatttctta--atgtgtgtaaaaaccttaaacgacactcattttaaaa 27067828  T
Q  187 cggaaggagtat 198  Q
    ||||||||||||    
T  27067829 cggaaggagtat 27067840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 40487969 - 40488032
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaa 161  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||||| |||||||||||||    
T  40487969 ataatttgataaaataacatcttcctttcttttaattaatgtatttcttaatatgtatgtaaaa 40488032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 7230914 - 7230819
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||  ||||||| ||||| | ||| |||| |||||| ||||||||| ||||| ||||||||||||| |||| |||||||||    
T  7230914 agttgattaggataatttactaaaatatcatctctctttatttttattaattcatttcttaatatgtgtgtaaaaatcttaaacgacattcatttt 7230819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 30680832 - 30680768
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaa 162  Q
    |||||||||||||||||||||| | ||||||||||| ||| ||||| ||| |||||| |||||||    
T  30680832 ataatttggtaaaataacatctctttttcttttaatcaatacattttttaatatgtacgtaaaaa 30680768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 11337606 - 11337531
Alignment:
Q  123 tttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagtat 198  Q
    |||||| |||| | |||||||| || ||||| |||||||| |||| |||| ||||||||||||| |||||||||||    
T  11337606 tttcttctaatcattgcatttcataatatgtgtgtaaaaaccttaaacgacattcattttgaaatggaaggagtat 11337531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 19373716 - 19373827
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| || |||||||||||||||||||| | |||||||||| |||||||| ||||| | ||| || ||    || | |||| ||||||||||| |    
T  19373716 agttgattaggagaatttggtaaaataacatctctctttcttttaactaatgcatctcttaatctgtgtgcaattggctaaaacgacattcattttgaga 19373815  T
Q  187 cggaaggagtat 198  Q
    ||||||||||||    
T  19373816 cggaaggagtat 19373827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 31190629 - 31190707
Alignment:
Q  109 aaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacg 188  Q
    ||||||||||| | ||| || |||||||| ||||||||| |||||||||||||| |||| |||| ||||||||| |||||    
T  31190629 aaataacatctattttt-ttataattaatacatttcttaatatgtatgtaaaaaccttaaacgacattcattttaaaacg 31190707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 42886869 - 42886980
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | ||||||||||||||||||||  | | ||||||||||| | |||| |||||| ||||| |||||| | || | |||| | ||||||| |||    
T  42886869 agttaataaggataatttggtaaaataacaattctctttcttttaatcattgcagttcttaatatgtttgtaaacacctaaaacgacactcattttaaaa 42886968  T
Q  187 cggaaggagtat 198  Q
    |||| |||||||    
T  42886969 cggagggagtat 42886980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 9189455 - 9189389
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgt 153  Q
    |||| |||| ||| ||||||||||||||||||| | ||| ||||||||||||||||| ||| |||||    
T  9189455 agttgattacgatgatttggtaaaataacatctctttttattttaattaatgcattttttaatatgt 9189389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 22857207 - 22857289
Alignment:
Q  108 aaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    |||||||||||  | ||||||||||||||||||||| ||| ||||| ||||||||  ||| | || ||| |||||||||||||    
T  22857207 aaaataacatcgctctttcttttaattaatgcattttttaatatgtgtgtaaaaactttaaatgacatttattttgaaacgga 22857289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 30934824 - 30934718
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgta-aaaatcttagacgatattcattttgaaacgga 190  Q
    |||| ||||||||| ||||||||||||| | |||||||||| ||||| |||||| |  |||| |||| ||||  ||| |||||||| ||||| |||||||    
T  30934824 attatgataatttgataaaataacatctctctttcttttaactaatgtatttctcaacatgtgtgtagaaaaatttaaacgatatttattttaaaacgga 30934725  T
Q  191 aggagta 197  Q
     ||||||    
T  30934724 gggagta 30934718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 129
Target Start/End: Complemental strand, 40717690 - 40717648
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttt 129  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  40717690 agttgattaagataatttggtaaaataacatctctatttcttt 40717648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 8817282 - 8817351
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatctta 167  Q
    |||||||| ||||||||| ||| | ||||||||||||||| ||||||||| ||| | |||||||| ||||    
T  8817282 ataatttgataaaataacgtctctctttcttttaattaatacatttcttaatatatttgtaaaaacctta 8817351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 44064475 - 44064382
Alignment:
Q  97 gataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    |||||||||||||||||| ||| | | ||||||||||| | ||||||||||| ||||| |||||||| || | | || | |||||||||||||||    
T  44064475 gataatttggtaaaataatcat-tctctttcttttaatcattgcatttcttaatatgtgtgtaaaaacctaaaaagacactcattttgaaacgga 44064382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Complemental strand, 40717354 - 40717293
Alignment:
Q  125 tcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||| ||||||||||||||||| ||||| |||||||| |||| ||||  ||||||| ||||    
T  40717354 tctttaaattaatgcatttcttaatatgtgtgtaaaaaccttaaacgacgttcatttggaaa 40717293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 29568037 - 29568136
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||| |||| |||| ||||||||||||||||| ||||||    
T  29568037 ataatttggtaaaataacatatttctttcttttaattaatgcatttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaacggatggagta 29568136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 26595085 - 26594980
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaa 191  Q
    |||| ||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||| |||||||| |||| |||| |||||||||||||||||     
T  26595085 attaggataatttggtaaaataacatctctctttcttttaattaatgtatttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaacggag 26594986  T
Q  192 ggagta 197  Q
    ||||||    
T  26594985 ggagta 26594980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 8895036 - 8894933
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||| |||| | ||||||| |||    
T  8895036 agttgattaggataatttggtaaaataacatctctctttcttttaattaatgcatttcttaatatgtatataaaaatcttaaacgacactcattttaaaa 8894937  T
Q  187 cgga 190  Q
    ||||    
T  8894936 cgga 8894933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 4009774 - 4009714
Alignment:
Q  27 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4009774 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 4009714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 18794552 - 18794452
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||| ||||||||| ||| |||| ||||||||| ||||||||| ||||    
T  18794552 ataatttggtaaaataacatatttctttcttttaattaatgcatttattaatatgtgtgtaaaaatattaaacgacattcattttaaaacggaagaagta 18794453  T
Q  198 t 198  Q
    |    
T  18794452 t 18794452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 196
Target Start/End: Complemental strand, 44557090 - 44556981
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||||||||||||||||||||||||| | | ||||||||||||||||||||| ||| ||||| | |||||| |||| |||| ||||||||| |||    
T  44557090 agtttattaagataatttggtaaaataacatttctctttcttttaattaatgcattttttaatatgtgtataaaaaccttaaacgacattcattttaaaa 44556991  T
Q  187 cggaaggagt 196  Q
     | |||||||    
T  44556990 tgaaaggagt 44556981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 8989649 - 8989585
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaa 162  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  8989649 ataatttggtaaaataacatctttctttcttttaattaatgcatttcttaatatgtgtgtaaaaa 8989585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 25560893 - 25560794
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||||||| ||| | ||||||||   || |||| |||||||||||||    
T  25560893 agttgattatgataatttggtaaaataacatctctctttcttttaattaatgtatttcttaatatatgtgtaaaaactctaaacgacattcattttgaaa 25560794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 5109 - 5218
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |||  |||| |||||||| || | | || ||||||||| |||    
T  5109 agttgattaggataatttggtaaaataacatctatctttctttaaattaatgcatttatta-aatgtgtgtaaaaacctcaaatgacattcattttaaaa 5207  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  5208 cggagggagta 5218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 5225846 - 5225747
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||||| |||||||||||||||||||    || | |||||||||||||  |||||||| |||||  ||||||| |||| |||||||| |||||||||    
T  5225846 agttaattatgataatttggtaaaataac----ttctctcttttaattaatatatttcttaatatgtgcgtaaaaaccttaaacgatattaattttgaaa 5225751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 7191227 - 7191167
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  7191227 agttgattaggataatttggtaaaataacatctctctttcttttaattaatacatttctta 7191167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 16757219 - 16757145
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaa 161  Q
    |||| |||| |||| |||||||||||||||| | | |||||||||||||||| |||||||| ||||| |||||||    
T  16757219 agttgattaggatagtttggtaaaataacatttctctttcttttaattaatgtatttcttaatatgtgtgtaaaa 16757145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 31699310 - 31699244
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgt 153  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||||||||||  ||||||| |||||    
T  31699310 agttgattatgataatttggtaaaataacatctctctttcttttaattaatgtgtttcttaatatgt 31699244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 34032111 - 34032001
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||| ||| |||||||||||| | || | |||| | ||||||| |||    
T  34032111 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcattttttaatatgtatgtaaacacctaaaacgacactcattttaaaa 34032012  T
Q  187 cggaaggagta 197  Q
    |||||||||||    
T  34032011 cggaaggagta 34032001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 28538335 - 28538392
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttc 144  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||||||||| ||||||    
T  28538335 agttgattatgataatttggtaaaataacatctctctttcttttaattaatacatttc 28538392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 14373444 - 14373341
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| ||||||||| |||    
T  14373444 agttaataaggataatttggtaaaataaccattctttttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacattcattttaaaa 14373345  T
Q  187 cgga 190  Q
    ||||    
T  14373344 cgga 14373341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 182
Target Start/End: Original strand, 14607546 - 14607628
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||||||||||||| ||||   || |||||||||||  ||||||||| || ||||| ||||||||||||| |||||||| |||||    
T  14607546 ataatttggtaaaacaacaa--ttctttcttttaatccatgcatttcataatatgtgtgtaaaaatcttaaacgatatttatttt 14607628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 38947725 - 38947826
Alignment:
Q  88 gttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaac 187  Q
    |||||||| | |||||||||||||||| |||| | |||||||||||| || ||||||||| || || ||| ||||  ||| |||| ||| ||||| ||||    
T  38947725 gttaattatggtaatttggtaaaataatatctctctttcttttaatt-atacatttcttaataggtgtgtgaaaacattaaacgacatttattttaaaac 38947823  T
Q  188 gga 190  Q
    |||    
T  38947824 gga 38947826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 44938553 - 44938503
Alignment:
Q  137 tgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaac 187  Q
    ||||||||||| ||||| ||||||||||||| ||||  |||||||||||||    
T  44938553 tgcatttcttaatatgtgtgtaaaaatcttaaacgacgttcattttgaaac 44938503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 46271038 - 46270949
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||||| ||||||||||| || ||| ||| || |||||||||||||| ||| ||| ||||||||||  ||| |||| |||||||||    
T  46271038 attacgataatctggtaaaataatattttttttt-ttgtaattaatgcatttattaatatttatgtaaaaacgttaaacgacattcatttt 46270949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 26352102 - 26352002
Alignment:
Q  97 gataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggag 195  Q
    |||||||||||||||||| ||| | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | ||||||| ||||||| ||||    
T  26352102 gataatttggtaaaataaacat-tctctttcttttaataattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttaaaacggatggag 26352004  T
Q  196 ta 197  Q
    ||    
T  26352003 ta 26352002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 27209119 - 27209168
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaa 136  Q
    |||| |||| ||||||||||||||||||||| | | ||||||||||||||    
T  27209119 agttgattaggataatttggtaaaataacatatctctttcttttaattaa 27209168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 27209536 - 27209605
Alignment:
Q  128 tttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||| ||| ||||| |||||||| |||| || | | ||||||||||| ||| ||||||    
T  27209536 tttaattaatgcattttttaatatgtgtgtaaaaaccttaaacaacactcattttgaaatggagggagta 27209605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 197
Target Start/End: Complemental strand, 28410794 - 28410729
Alignment:
Q  132 attaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||| ||||||||||| ||||| ||||| ||  ||| |||| ||||||||||||||||| ||||||    
T  28410794 attattgcatttcttaatatgtgtgtaacaactttaaacgacattcattttgaaacggagggagta 28410729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 30293466 - 30293567
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagt 196  Q
    |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||| | |||||| | || | |||| | || |||||||||||| |||||    
T  30293466 gataatttggtaaaataaccattatctttcttttaatcattgcatttcttaatatatgtgtaaacacctaaaacgacactcgttttgaaacggatggagt 30293565  T
Q  197 at 198  Q
    ||    
T  30293566 at 30293567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 33622379 - 33622322
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttc 144  Q
    |||| |||||||||||||| ||||||||||| | | ||||||||||||| || |||||    
T  33622379 agttgattaagataatttgataaaataacatatctctttcttttaattagtgtatttc 33622322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 50249430 - 50249503
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaa 160  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| ||||||    
T  50249430 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaa 50249503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 2610848 - 2610762
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| ||||| |||||||||||||||  ||||||  ||||||||||| |||||||| ||||| | ||||||  ||| |||| |||||||||    
T  2610848 attaggataacttggtaaaataacat--ttattt--tttaattaatgaatttcttaatatgtgtataaaaactttaaacgacattcatttt 2610762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 12484649 - 12484549
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagt 196  Q
    |||||||||||||||| |||  | | |||||||||||   || |||||||| ||||| |||||||| |||| |||  |||||||||| ||| || |||||    
T  12484649 gataatttggtaaaatgacaattatctttcttttaatctttgtatttcttaatatgtgtgtaaaaaccttaaacggcattcattttgtaacagagggagt 12484550  T
Q  197 a 197  Q
    |    
T  12484549 a 12484549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 33694432 - 33694388
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatt 142  Q
    |||||||||||||||||||| | | ||| ||||||||||||||||    
T  33694432 ataatttggtaaaataacatatctctttattttaattaatgcatt 33694388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 4268871 - 4268964
Alignment:
Q  96 agataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgg 189  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| |||| |||| ||||||||| ||||||    
T  4268871 agataatttggtaaaataacatctttctttcttttaattaatgcatttcttaatatgtgtgtaaaaaccttaaacgacattcattttaaaacgg 4268964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 35345382 - 35345322
Alignment:
Q  27 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35345382 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 35345322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 4268790 - 4268863
Alignment:
Q  94 taagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatctta 167  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |||||||| ||||    
T  4268790 taagataatttggtaaaataacatctctctttcttttaattaatgcatttcttaatatgtgtgtaaaaacctta 4268863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 47461395 - 47461285
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||| |||||| |||||||| ||| |||||||||||| |||||||| ||||| ||||||||| ||| ||||  ||||||||||||    
T  47461395 agttgattaggataatttgataaaatgacatcttttttt-ttttaattaatgtatttcttaatatgtgtgtaaaaattttaaacgacgttcattttgaaa 47461297  T
Q  187 cggaaggagtat 198  Q
    |||| |||||||    
T  47461296 cggatggagtat 47461285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 28289345 - 28289445
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | ||| |||||||||||| |||| ||| ||||| |||||||| |||| |||| ||||||||| |||    
T  28289345 agttgattaggataatttggtaaaataacatctctctttattttaattaatgtatttattaatatgtgtgtaaaaaccttaaacgacattcattttaaaa 28289444  T
Q  187 c 187  Q
    |    
T  28289445 c 28289445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 193
Target Start/End: Original strand, 34012587 - 34012693
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||| | | |||||||||||||||| |||||||| ||| | |||||||| |||| | |  |||||||||||||    
T  34012587 agttgattaggataatttggtaaaataacatttatctttcttttaattaatggatttcttaatatatgtgtaaaaaccttaaatgccattcattttgaaa 34012686  T
Q  187 cggaagg 193  Q
     ||||||    
T  34012687 tggaagg 34012693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 42286028 - 42286138
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | ||||||||||||||||||||  | | ||| ||||||| | ||||||||||| ||||| |||||||| |||| |||| ||||||||| |||    
T  42286028 agttaataaggataatttggtaaaataacaattctctttattttaatcattgcatttcttaatatgtttgtaaaaaccttaaacgacattcattttaaaa 42286127  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  42286128 cggagggagta 42286138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 19303410 - 19303314
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacg 188  Q
    |||| |||||||| |||||||||||| | | ||||||||||||||||||||| ||| |||| |||||||||  ||| |||| ||| |||||||||||    
T  19303410 attatgataatttagtaaaataacatttctctttcttttaattaatgcattttttaatatgcatgtaaaaactttaaacgaaatttattttgaaacg 19303314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 7335411 - 7335465
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcat 141  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  7335411 agttgattatgataatttggtaaaataacatctttctttcttttaattaatgcat 7335465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 48843683 - 48843780
Alignment:
Q  87 agttaattaagataatttggt--aaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| |||||||||||  |||||||||||| | ||||||||||| | ||||||||||| |||||||||||||| |||| |||| | |||||||    
T  48843683 agttgattaggataatttggtgtaaaataacatctctctttcttttaatcagtgcatttcttaatatgtatgtaaaaaccttaaacgacactcatttt 48843780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 30312683 - 30312776
Alignment:
Q  105 ggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagtat 198  Q
    ||||||||||||| | | ||||||||||||||||||||| ||| ||| | |||||||| |||| |||| ||||||||| | ||||| |||||||    
T  30312683 ggtaaaataacatttatctttcttttaattaatgcattttttaatatatgtgtaaaaaccttaaacgacattcattttaatacggagggagtat 30312776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 40753439 - 40753371
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatctta 167  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||| |||||||| ||||    
T  40753439 ataatttggtaaaataatatcttttttt-ttttaattaatgcatttcttaatatgtgtgtaaaaacctta 40753371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 40339589 - 40339649
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| |||| ||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  40339589 agttgattaggataatttggtaaaataacatttctctttcttttaattaatgcatttctta 40339649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 37490918 - 37491027
Alignment:
Q  87 agttaattaagataatttggtaaaata--acatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttga 184  Q
    |||| ||||||||||||||||||||||  |||||||| ||||   |||||||| ||||||||| ||||| |||||||| |||| |||| ||| ||||||     
T  37490918 agtttattaagataatttggtaaaatatcacatctttttttc---taattaattcatttcttaatatgtgtgtaaaaaccttaaacgacatttattttgt 37491014  T
Q  185 aacggaaggagta 197  Q
    |||| | ||||||    
T  37491015 aacgaatggagta 37491027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 6563434 - 6563336
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    |||| ||||||||| ||||||||||| | | |||||||||||||||| |||||||| ||| |  |||||||  ||| |||| ||||||||| |||||||    
T  6563434 attaggataatttgataaaataacatgtctctttcttttaattaatgtatttcttaatatatgcgtaaaaaatttaaacgacattcattttaaaacgga 6563336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 45499845 - 45499759
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctt-tatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacga 172  Q
    ||||||||| ||||||||||||||||| |||| | | ||| |||||||||||| |||||||| ||||| |||||||| |||| ||||    
T  45499845 agttaattaggataatttggtaaaatagcatcatctctttattttaattaatgtatttcttaatatgtgtgtaaaaagcttaaacga 45499759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 18270698 - 18270801
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| | |||||||||||||||||| ||| | ||||||||||||| | ||||||||||| ||||| |||||| | || | |||| | ||||||||||    
T  18270698 agttaataaggataatttggtaaaataatcat-tctatttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttgaa 18270796  T
Q  186 acgga 190  Q
    |||||    
T  18270797 acgga 18270801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 21819413 - 21819469
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcattt 143  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||||||||| ||||    
T  21819413 agtttattaggataatttggtaaaataacatctctctttcttttaattaatgtattt 21819469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 24780334 - 24780259
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatctta 167  Q
    |||| |||||||| |||||||||||||| | ||||||||||||||| ||||| |||  ||||| ||||||| ||||    
T  24780334 attaggataatttagtaaaataacatctctttttcttttaattaatacattttttaacatgtacgtaaaaacctta 24780259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 25055916 - 25056020
Alignment:
Q  91 aattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    ||||| |||||| |||||||||||||||| |  |||||||||||||| ||||| ||| ||| | ||||||||  ||| || | ||||||||| |||||||    
T  25055916 aattatgataatgtggtaaaataacatctct--ttcttttaattaatacattttttaatatatgtgtaaaaactttaaacaacattcattttaaaacgga 25056013  T
Q  191 aggagta 197  Q
     ||||||    
T  25056014 tggagta 25056020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 29636242 - 29636187
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| ||||||||| ||||||||||||| | |||||||| ||||||||||||||||    
T  29636242 attaggataatttgataaaataacatctctctttcttttgattaatgcatttctta 29636187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 47187792 - 47187867
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacga 172  Q
    ||||||||||||||||||||  | | ||||||||||| ||||||||| ||| |||| ||||||||| |||| ||||    
T  47187792 gataatttggtaaaataacaattctctttcttttaatcaatgcattttttaatatgcatgtaaaaaccttaaacga 47187867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 6747347 - 6747449
Alignment:
Q  88 gttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaac 187  Q
    |||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | ||||||||||||    
T  6747347 gttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaac 6747446  T
Q  188 gga 190  Q
    |||    
T  6747447 gga 6747449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 12977717 - 12977607
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | |||||||||||    
T  12977717 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaa 12977618  T
Q  187 cggaaggagta 197  Q
    || | ||||||    
T  12977617 cgaatggagta 12977607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 18292455 - 18292565
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | |||||||||||    
T  18292455 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaa 18292554  T
Q  187 cggaaggagta 197  Q
    || | ||||||    
T  18292555 cgaagggagta 18292565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 12983175 - 12983074
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | |||||||||||    
T  12983175 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttgaaa 12983076  T
Q  187 cg 188  Q
    ||    
T  12983075 cg 12983074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 715884 - 715784
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagt 196  Q
    ||||||||||||||||||    ||| ||||||||||| | ||||||||||| ||| | |||||| | || | |||| | ||||||||||||||| |||||    
T  715884 gataatttggtaaaataatgattttctttcttttaatcattgcatttcttaatatatgtgtaaagagctaaaacgacactcattttgaaacggatggagt 715785  T
Q  197 a 197  Q
    |    
T  715784 a 715784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 2297163 - 2297274
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| |||||||||||||||||||| ||| | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | | ||||||||    
T  2297163 agttaataaagataatttggtaaaataatcat-tctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacaataattttgaa 2297261  T
Q  186 acggaaggagtat 198  Q
    || || |||||||    
T  2297262 acagagggagtat 2297274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 39136043 - 39135999
Alignment:
Q  155 tgtaaaaatcttagacgatatt-cattttgaaacggaaggagtat 198  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||    
T  39136043 tgtaaaaatcttaaacgatatttcattttgaaacggaaggagtat 39135999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 186
Target Start/End: Complemental strand, 8293079 - 8292990
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgca-tttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||||||||||||||||||  | ||||||||||||| |||| ||| ||| || ||||| ||||| |||| || | |||||||||||||    
T  8293079 gataatttggtaaaataacatc-ctctttcttttaattactgcatttttttaatacgtatgcaaaaaccttaaacaacattcattttgaaa 8292990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 24793280 - 24793318
Alignment:
Q  149 tatgtatgtaaaaatcttagacgatattcattttgaaac 187  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  24793280 tatgtatgtaaaaaccttaaacgatattcattttgaaac 24793318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 34274914 - 34275024
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| |||||||||||||||||||||   | | ||||||||||| | || |||||||| ||||  |||||| | || | |||| ||| ||||| |||    
T  34274914 agttaataaagataatttggtaaaataaccattctctttcttttaatcattgtatttcttaatatgcgtgtaaacacctaaaacgacatttattttaaaa 34275013  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  34275014 cggagggagta 34275024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 10476266 - 10476375
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttctt----ttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||| ||||||||||| | | ||||||    ||||||||||||||| ||| ||||| |||||||| |||| || | ||  |||||    
T  10476266 agttgattaggataatttgataaaataacatttctctttcttttaattaattaatgcatttattaatatgtgtgtaaaaaccttaaacaacatctatttt 10476365  T
Q  183 gaaacggaag 192  Q
     |||||||||    
T  10476366 aaaacggaag 10476375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 11977718 - 11977829
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||| ||||| |||||||| |||| |||| | |||||||||||    
T  11977718 agttgattaggataatttggtaaaacaacatctctctttcttttaattaatgcatttcttaatatgtgtgtaaaaagcttaaacgacactcattttgaaa 11977817  T
Q  187 cggaaggagtat 198  Q
    |||| |||||||    
T  11977818 cggatggagtat 11977829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 1309376 - 1309271
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaa 191  Q
    |||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||| |||| | || |||||||||||||||||     
T  1309376 attatgataatttgataaaataacatatctatttcttttaattaatgcatttcttaatatgtgtgtaaaaaccttaaatgacattcattttgaaacggat 1309277  T
Q  192 ggagta 197  Q
    ||||||    
T  1309276 ggagta 1309271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 13974404 - 13974505
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||||| || | ||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||||||| |||    
T  13974404 agttgattaggataatttggtaaaataacacctctctttcttttaattaatgcatttcttaatatgtgtgtaaaaatcttaaacgacattcattttaaaa 13974503  T
Q  187 cg 188  Q
    ||    
T  13974504 cg 13974505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 39343930 - 39343870
Alignment:
Q  27 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39343930 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcaga 39343870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 843148 - 843259
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||| | |  |||||||||||||||||||||||| ||| | || | |||||||| |||  |||||||||||||    
T  843148 agttgattaggataatttggtaaaataacatatctccttcttttaattaatgcatttcttaatatttgtggagaaatcttaaacgtcattcattttgaaa 843247  T
Q  187 cggaaggagtat 198  Q
    |||| |||||||    
T  843248 cggagggagtat 843259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 34534489 - 34534592
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||| |||| | ||||||||||||||||||||| ||| ||||| |||||||| || | || | |||||||||||||    
T  34534489 agttgattaggataatttggtaaaataatatctctctttcttttaattaatgcattttttaatatgtgtgtaaaaacctcaaacaacattcattttgaaa 34534588  T
Q  187 cgga 190  Q
    ||||    
T  34534589 cgga 34534592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 97 - 190
Target Start/End: Complemental strand, 14161913 - 14161819
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatg-taaaaatcttagacgatattcattttgaaacgga 190  Q
    ||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||| ||  ||||| |||| |||| |||||||||||||||||    
T  14161913 gataatttgataaaataacatccttctttcttttaattaatgcatttcttaatatgtgtgcaaaaaaccttaaacgacattcattttgaaacgga 14161819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 21634246 - 21634351
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaa 191  Q
    |||| |||| |||||||||||||||||| | ||| ||||||||||||||||||||| ||||| ||||||||  ||| |||| ||||||||| |||| ||     
T  21634246 attatgatactttggtaaaataacatctctctttattttaattaatgcatttcttaatatgtgtgtaaaaactttaaacgacattcattttaaaacagat 21634345  T
Q  192 ggagta 197  Q
    ||||||    
T  21634346 ggagta 21634351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 21642493 - 21642598
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaa 191  Q
    |||| |||| |||||||||||||||||| | ||| ||||||||||||||||||||| ||||| ||||||||  ||| |||| ||||||||| |||| ||     
T  21642493 attatgatactttggtaaaataacatctctctttattttaattaatgcatttcttaatatgtgtgtaaaaactttaaacgacattcattttaaaacagat 21642592  T
Q  192 ggagta 197  Q
    ||||||    
T  21642593 ggagta 21642598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 7736504 - 7736615
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgca-tttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    |||| |||| |||||| |||||||||||||| | | ||| |||||||||||||| ||| ||| ||||| ||||||||||||| |||| ||||||||||||    
T  7736504 agttgattaggataatatggtaaaataacatatctctttattttaattaatgcatttttttaatatgtgtgtaaaaatcttaaacgacattcattttgaa 7736603  T
Q  186 acggaaggagta 197  Q
    | ||| ||||||    
T  7736604 atggagggagta 7736615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 87 - 196
Target Start/End: Original strand, 27797908 - 27798015
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| ||||||||||||||||||||||||||  || |||||||||||||||| |||| ||| ||||||||||||||  ||| |||| ||| ||||| |||    
T  27797908 agttgattaagataatttggtaaaataacat--ttctttcttttaattaatgtattttttaatatgtatgtaaaaaatttaaacgacatttattttaaaa 27798005  T
Q  187 cggaaggagt 196  Q
     |||| ||||    
T  27798006 tggaaagagt 27798015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 147
Target Start/End: Original strand, 11195207 - 11195265
Alignment:
Q  89 ttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  11195207 ttaaataagataatttggtaaaataacatatttctttcttttaattaatggatttctta 11195265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 107 - 196
Target Start/End: Complemental strand, 4911112 - 4911023
Alignment:
Q  107 taaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagt 196  Q
    ||||||||||| | | |||||||||||||||| |||||||| ||||| |||||||| |||| | || |||||||||||||| || |||||    
T  4911112 taaaataacatttatctttcttttaattaatgtatttcttaatatgtgtgtaaaaaccttaaatgacattcattttgaaacagatggagt 4911023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 28591643 - 28591547
Alignment:
Q  89 ttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaac 187  Q
    ||||||| ||||||||||||||||||||||  | |||||||||||||||| |||| ||| ||||| |||||||| |||  | || ||||||||| ||||    
T  28591643 ttaattaggataatttggtaaaataacatc--tctttcttttaattaatgtatttattaatatgtgtgtaaaaaactttaatgacattcattttaaaac 28591547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 10344955 - 10344854
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagt 196  Q
    |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | ||||||||||||||| |||||    
T  10344955 gataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaagacctaaaacgacactcattttgaaacggagggagt 10344856  T
Q  197 at 198  Q
    ||    
T  10344855 at 10344854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 36165017 - 36165115
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||| |   ||||||||||||||||||||| ||| ||||  |||||||| |||| |||  ||| |||||||||    
T  36165017 agttgattaggataatttggtaaaataacatttacctttcttttaattaatgcattttttaatatg--tgtaaaaaacttaaacggcatttattttgaaa 36165114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 38370002 - 38370082
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatctta 167  Q
    |||| |||| ||||||||||||||||||||| | | ||| ||||||||||||||||| ||| ||| | |||||||| ||||    
T  38370002 agttgattaggataatttggtaaaataacatatctctttattttaattaatgcatttattaatatatgtgtaaaaacctta 38370082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 34381819 - 34381712
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||| ||||||||||||||| |||    |||| |||| |||||||| ||||| |||||||| |||| || | ||| |||||||||    
T  34381819 agttgattaggataatttgttaaaataacatcttttttt----taatcaatgtatttcttaatatgtgtgtaaaaaccttaaactacatttattttgaaa 34381724  T
Q  187 cggaaggagtat 198  Q
    || | |||||||    
T  34381723 cgaacggagtat 34381712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 27557834 - 27557777
Alignment:
Q  96 agataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgt 153  Q
    |||||||||| ||||||||||||| |  ||||||||||||||| |||||||| |||||    
T  27557834 agataatttgataaaataacatctcttattcttttaattaatgtatttcttaatatgt 27557777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 32158662 - 32158735
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaa 160  Q
    ||||||| |||||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| ||||||    
T  32158662 agttaataaagataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaa 32158735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 7579587 - 7579511
Alignment:
Q  122 atttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagtat 198  Q
    |||| ||||||||||||||||| | | || || |||||||| |||| |||||||| ||||| ||| |||||||||||    
T  7579587 attttttttaattaatgcatttatcaatacgtgtgtaaaaaccttaaacgatatttattttaaaatggaaggagtat 7579511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 15167024 - 15166934
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacg 188  Q
    ||||||||||||||||||| ||| |||||| ||||||||||  |||| ||| ||| | | ||||||| ||| |||| ||||||||| |||||    
T  15167024 gataatttggtaaaataacgtctctatttc-tttaattaatatattttttaatatatgtataaaaattttaaacgacattcattttaaaacg 15166934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 38362160 - 38362110
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaat 137  Q
    ||||||||| |||||||| |||||||||||| | | |||||||||||||||    
T  38362160 agttaattaggataatttagtaaaataacatttctctttcttttaattaat 38362110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 9065683 - 9065583
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||| |||||||||| || | | |||||||||||||||| ||||||||  || |||||  ||| |||| || | |||||||||||||    
T  9065683 agttgattatgataattcggtaaaataaaat-tatctttcttttaattaatgtatttctta--atatatgtttaaaccttaaacaacattcattttgaaa 9065587  T
Q  187 cgga 190  Q
    ||||    
T  9065586 cgga 9065583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 8540169 - 8540272
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||| |||    
T  8540169 agttgattaggataatttgataaaataacatctctttttcttttaattaatgcatttcttaatatgtgtgtaaaaatcttaaactatattcattttaaaa 8540268  T
Q  187 cgga 190  Q
    ||||    
T  8540269 cgga 8540272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 37038792 - 37038689
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||| |||| | |||||||||||    
T  37038792 agttgattaggataatttggtaaaataacatctctctttcttttaattaatgtatttcttaatatgtgtgtaaaaatcttaaacgacactcattttgaaa 37038693  T
Q  187 cgga 190  Q
    ||||    
T  37038692 cgga 37038689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 11188272 - 11188162
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||| ||||||||||||||||| | |||||||| |||||||||||| ||| ||||| ||||| || |||| |||| |||||||||||||    
T  11188272 agttgattaggataacttggtaaaataacatctctctttcttttgattaatgcatttattaatatgtgtgtaagaaccttaaacgacattcattttgaaa 11188173  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  11188172 cggagggagta 11188162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 33056021 - 33056131
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||||||||  ||||| ||| ||||| ||||||| ||||| |||| ||||||||| |||    
T  33056021 agttgattatgataatttggtaaaataacatctctctttcttttaattaagacattttttaatatgtgtgtaaaattcttaaacgacattcattttaaaa 33056120  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  33056121 cggatggagta 33056131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 27964247 - 27964140
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||  |||||| ||| ||||||||| || | ||||| |||||||    
T  27964247 agttgattaaaataatttggtaaaataacatctttctttcttttaattaatgcatttct--ttatgtgtgt-aaaatcttaaacaacattcaatttgaaa 27964151  T
Q  187 cggaaggagta 197  Q
     ||| ||||||    
T  27964150 tggagggagta 27964140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 44712255 - 44712176
Alignment:
Q  88 gttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatctta 167  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||||||| |||| ||| ||||| |||||||||||||    
T  44712255 gttaattaggataatttggtaaaattacatctttctttcttttaattaatgtattttttaatatgtgtgtaaaaatctta 44712176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 197
Target Start/End: Original strand, 43971929 - 43972016
Alignment:
Q  110 aataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||| | | |||||||| |||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||| || ||||||    
T  43971929 aataacatatctctttcttttgattaatgcatttcttaatatgtgtgtaaaaaccttagacgacattcattttgaaacagagggagta 43972016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 197
Target Start/End: Complemental strand, 9391621 - 9391505
Alignment:
Q  82 ttcagagttaattaagataatttggtaaaataacatct-ttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatt 180  Q
    |||| |||| |||| ||||||||||||||||||||| | || ||| ||||||||||| ||||| ||| ||||| ||||||||||||| | || ||| |||    
T  9391621 ttcaaagttgattaggataatttggtaaaataacatatctttttttttttaattaatacattttttaatatgtgtgtaaaaatcttaaatgacatttatt 9391522  T
Q  181 ttgaaacggaaggagta 197  Q
    ||||||| || ||||||    
T  9391521 ttgaaactgatggagta 9391505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 14833772 - 14833680
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgt-aaaaatcttagacgatattcattttgaaacg 188  Q
    ||||||||||||||||||||| | ||||| |||||||| |||||||||||| ||| ||||| ||||| |||| |||| |||||||| ||||||    
T  14833772 gataatttggtaaaataacatttatatttattttaattgatgcatttcttaatatatatgtaaaaaaccttaaacgacattcatttcgaaacg 14833680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 4658254 - 4658156
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| || |||||||||||||||||||||| ||| ||||||||||| ||||| ||| ||||| |||||||| |||| |||| | |||||||||||    
T  4658254 agttgattaggacaatttggtaaaataacatctttctttattttaattaatacattttttaatatgtgtgtaaaaa-cttaaacgacactcattttgaaa 4658156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 182
Target Start/End: Original strand, 10195805 - 10195900
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||||||||||||||||| | ||||||||||||||| |||| |||| ||  |||||||||| |||| |||| | |||||||    
T  10195805 agttgattaggataatttggtaaaataacatctctctttcttttaattaatacattccttaataaatatgtaaaaaccttaaacgacactcatttt 10195900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 29412114 - 29412225
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||| | | | || |||||||||||||||||||||| |||   |||||||| |||| |||| ||| |||||||||    
T  29412114 agttgattaggataatttggtaaaataacttatctcttccttttaattaatgcatttcttaatatacgtgtaaaaaccttaaacgacattaattttgaaa 29412213  T
Q  187 cggaaggagtat 198  Q
     ||| |||||||    
T  29412214 tggagggagtat 29412225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 4469591 - 4469650
Alignment:
Q  102 tttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaa 162  Q
    |||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||    
T  4469591 tttggtaaaataacatctctctttcttttaattaatgcatttctta-tatgtgtgtaaaaa 4469650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 19164495 - 19164587
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    |||||||||||||||||||| | | |||||||||||||||  |||||||| ||| | |||||||| |||| || | |||| ||||||||||||    
T  19164495 ataatttggtaaaataacatatctctttcttttaattaataaatttcttaatatatgtgtaaaaaccttaaacaacattcgttttgaaacgga 19164587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 15083182 - 15083081
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaa 191  Q
    |||| ||||||||||||||||||||||    ||||||||||||||||||||| ||| ||| | ||||||||  ||| |  | ||||||||| |||||||     
T  15083182 attatgataatttggtaaaataacatc----tttcttttaattaatgcatttattaatatatgtgtaaaaactttaaataacattcattttaaaacggat 15083087  T
Q  192 ggagta 197  Q
    ||||||    
T  15083086 ggagta 15083081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 45423748 - 45423848
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagt 196  Q
    |||||||||||||||||| |  | ||||| ||||||| | | ||||||||| ||||| ||||||||| ||| |||| ||||||||| ||| ||| |||||    
T  45423748 gataatttggtaaaataataattctatttattttaatcatttcatttcttaatatgtgtgtaaaaattttaaacgacattcattttaaaatggagggagt 45423847  T
Q  197 a 197  Q
    |    
T  45423848 a 45423848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 11132692 - 11132754
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaa 162  Q
    |||||||||||| |||| ||||||  |||||||||||||||||||||||| |||||  |||||||    
T  11132692 ataatttggtaatataatatcttt--ttcttttaattaatgcatttcttaatatgtgcgtaaaaa 11132754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 7872788 - 7872700
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacg 188  Q
    ||||||||||||||||| |||| |  ||||||||||||||| |||| ||| ||||| |||||||| | || || | ||||||||| |||||    
T  7872788 ataatttggtaaaataatatctct--ttcttttaattaatgaattttttaatatgtgtgtaaaaaccataaacaacattcattttaaaacg 7872700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 36685759 - 36685670
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| ||||||||||||||||||||| | | ||| |||||||||||  |||| ||| ||||| |||| ||| |||| |||| |||||||||    
T  36685759 attaggataatttggtaaaataacatatct-ttttttttaattaatatatttattaatatgtgtgtataaaccttaaacgacattcatttt 36685670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 40608628 - 40608519
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||| |  ||| ||||||||||||||||  ||| ||| ||| | | ||||||||||| || | |||||||||  ||    
T  40608628 agttgattaggataatttggtaaaataatacattt-tttcttttaattaatgtgtttattaatatatgtataaaaatcttaaacaacattcattttacaa 40608530  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  40608529 cggatggagta 40608519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 18579303 - 18579352
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||||| ||||||||||||||| |  |||||| |||||||||||||||||    
T  18579303 ataattcggtaaaataacatctcttattctttaaattaatgcatttctta 18579352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 45301896 - 45301994
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||| |||||||||  | || ||||||||||||| ||||||| ||| ||||| |||||| | || | |  ||| ||||||||||||||| ||||||    
T  45301896 ataatttgataaaataac--cattctttcttttaattattgcatttattaatatgtgtgtaaagacctaaaataatactcattttgaaacggatggagta 45301993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 681739 - 681679
Alignment:
Q  137 tgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    ||||||||||| ||||| || ||||| |||| |||| | ||||||||||||||| ||||||    
T  681739 tgcatttcttaatatgtgtgcaaaaaccttaaacgacactcattttgaaacggagggagta 681679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 32022933 - 32022834
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| |||||||||||||||||||| ||| | | ||||||||||| | | ||||||||| ||||| |||||| | || | |||| | ||||||||||    
T  32022933 agttaataaagataatttggtaaaataatcat-tctctttcttttaatcattacatttcttaatatgtgtgtaaagacctaaaacgacactcattttgaa 32022835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 34455822 - 34455878
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcattt 143  Q
    |||| |||| ||||||||||||||| ||||||| | ||||||||||| |||| ||||    
T  34455822 agttgattaggataatttggtaaaagaacatctctctttcttttaatcaatgaattt 34455878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 47817869 - 47817979
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||| ||||| | |||||| |||| |||| |||||||||||||    
T  47817869 agttgattatgataaattggtaaaataacatctctctttcttttaattaatgcatttcttaatatgtgtataaaaaacttaaacgacattcattttgaaa 47817968  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  47817969 cggagggagta 47817979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 41496335 - 41496445
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||| ||||||||| | ||||||||||||||||| ||||| ||| ||||| |||||||| |||| |||||||||||||| |||    
T  41496335 agttgattaggataatttggtgaaataacatttctatttcttttaattaatacattttttaatatgtgtgtaaaaaccttaaacgatattcattttaaaa 41496434  T
Q  187 cggaaggagta 197  Q
     ||||||||||    
T  41496435 tggaaggagta 41496445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 30261389 - 30261489
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| ||||| |||||||||||||||||||||| | ||||||| |||||||| |||||||| ||||| ||||||||  ||| ||||||||||||||||||    
T  30261389 agttgattaaaataatttggtaaaataacatctctctttctttaaattaatgtatttcttaatatgtgtgtaaaaactttaaacgatattcattttgaaa 30261488  T
Q  187 c 187  Q
    |    
T  30261489 c 30261489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 44651023 - 44651119
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacg 188  Q
    |||| ||||||||||||||||||||| | | ||||||||||||||||||||||| | ||||| | ||||||||||| |||||||| |||||||||||    
T  44651023 attatgataatttggtaaaataacatatatctttcttttaattaatgcatttctaaatatgtgtataaaaatcttaaacgatatttattttgaaacg 44651119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 19451216 - 19451128
Alignment:
Q  102 tttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    |||||||||||||||||| | ||||||||||||||||||||||||| ||||| ||||||||  ||| || | |||||||||||||||||    
T  19451216 tttggtaaaataacatctctctttcttttaattaatgcatttcttaatatgtgtgtaaaaactttaaacaacattcattttgaaacgga 19451128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 47458413 - 47458319
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||||||||| |||| ||| ||||| ||||||||||||| |||||||| |||||    
T  47458413 agttgattaggataatttggtaaaataacatctgtctttcttttaattaatgtattttttaatatgtgtgtaaaaatctta-acgatatttatttt 47458319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 44061124 - 44061234
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||| |||||||||||||| | ||||| ||||||||||||||||||| || || | |||||| |||| |||| ||||||||| |||    
T  44061124 agttgattatgataatttagtaaaataacatctatttttctcttaattaatgcatttcttaatacgtgtataaaaaccttaaacgacattcattttaaaa 44061223  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  44061224 cggatggagta 44061234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 10573181 - 10573085
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgca-tttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||| ||||| | ||| ||| ||||| ||||||||||||| |||| |||||||||    
T  10573181 agttgattaggataatttggtaaaataacatctctctttcttttaaataatgtatttttttaatatgtgtgtaaaaatcttaaacgacattcatttt 10573085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 52162239 - 52162294
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||    
T  52162239 attaagataatttggtaaaataacatctctagttcttttaactaatgcatttctta 52162294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 89 - 162
Target Start/End: Original strand, 11364358 - 11364431
Alignment:
Q  89 ttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaa 162  Q
    ||||||||||||||||||||||||||||| |   ||||||||||||||||||||| ||| ||||| | ||||||    
T  11364358 ttaattaagataatttggtaaaataacatatccctttcttttaattaatgcattttttaatatgtgtataaaaa 11364431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 36558326 - 36558217
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||| |  | | ||||||||||| | |||||||||||  |||| |||||||| |||| ||||  ||||||||||||    
T  36558326 agttaataaggataatttggtaaaataaaaattatctttcttttaatcattgcatttctta--atgtgtgtaaaaaccttaaacgaccttcattttgaaa 36558229  T
Q  187 cggaaggagtat 198  Q
    | ||||||||||    
T  36558228 ctgaaggagtat 36558217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 6991279 - 6991188
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacg 188  Q
    |||||||||||| ||||| || | | ||||||||||||||||||||||||| ||||| | |||||| |||  |||| ||||||||| |||||    
T  6991279 gataatttggtataataaaatatctctttcttttaattaatgcatttcttaatatgtgtataaaaaccttgaacgaaattcattttaaaacg 6991188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 7906033 - 7905922
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | ||||||||||||||||||||  | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | ||||||| |||    
T  7906033 agttaataaggataatttggtaaaataacaattctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcattttaaaa 7905934  T
Q  187 cggaaggagtat 198  Q
    |||| |||||||    
T  7905933 cggagggagtat 7905922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 50203204 - 50203305
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||| ||||||||| ||| |||||||||| |||  ||||||||| |||||  ||||||| |||| || | |||||||||| ||    
T  50203204 agttgattatgataatttggtgaaataacatatttctttcttttaactaacacatttcttaatatgtgcgtaaaaaccttaaacaacattcattttgtaa 50203303  T
Q  187 cg 188  Q
    ||    
T  50203304 cg 50203305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 38510271 - 38510171
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||||||| | | | ||||||||||| | ||||||| ||| ||||| |||||| |||| | |||| | ||||||| ||||||| ||||||    
T  38510271 ataatttggtaaaataacctttctttttcttttaatcattgcattttttaatatgtgtgtaaagatctaaaacgacactcattttaaaacggatggagta 38510172  T
Q  198 t 198  Q
    |    
T  38510171 t 38510171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 620202 - 620091
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| ||||| |||||||||||||||||||||| |  |||||||||| |||  |||| ||| ||| | |||||||| |||| |||| | | |||||||||    
T  620202 agttgattaaaataatttggtaaaataacatctctccttcttttaataaatatattttttaatatatgtgtaaaaaccttaaacgacaattattttgaaa 620103  T
Q  187 cggaaggagtat 198  Q
     ||| |||||||    
T  620102 aggagggagtat 620091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 25123644 - 25123557
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcat 179  Q
    |||| |||||||| ||||||||| || | | || ||||||||||||| |||| ||| ||| ||||||||||||||| || ||||||||    
T  25123644 attaggataatttagtaaaataatatatctcttgcttttaattaatgtattttttaatatttatgtaaaaatcttaaacaatattcat 25123557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 197
Target Start/End: Complemental strand, 34413562 - 34413463
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    ||||||| |||||||||||| | | |||||||||||||| |||||||||| | ||| | ||||||  ||| ||||  |||||||| ||||||| ||||||    
T  34413562 ataatttagtaaaataacatttctctttcttttaattaacgcatttcttaatttgtgtataaaaacattaaacgacgttcattttaaaacggagggagta 34413463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 4505456 - 4505566
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||  | |||||||||||    
T  4505456 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtttgtaaacacctaaaacggcactcattttgaaa 4505555  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  4505556 cggagggagta 4505566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 33034181 - 33034235
Alignment:
Q  91 aattaagataatttggtaaaataacatctttatttcttttaattaatgcatttct 145  Q
    |||||||||||||||||||||| |||| | | |||||||||||||||| ||||||    
T  33034181 aattaagataatttggtaaaatgacatatctttttcttttaattaatgtatttct 33034235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 56460227 - 56460313
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| ||||||||| || | | |||||||||||||||| ||||||||  | |||||||||||  ||| | || |||||||||||||    
T  56460227 ataatttagtaaaataatatatctctttcttttaattaatgtatttctta--acgtatgtaaaaaatttaaatgacattcattttgaaa 56460313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 25231295 - 25231398
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| ||||||||||| |||||||| ||| | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | |||| |||||    
T  25231295 agttaataaagataatttgataaaataatcat-tctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaacgacactcatattgaa 25231393  T
Q  186 acgga 190  Q
    |||||    
T  25231394 acgga 25231398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 204
Target Start/End: Original strand, 37624686 - 37624793
Alignment:
Q  97 gataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggag 195  Q
    |||||||||||||||||| ||| | | ||||||||||| | ||||||||||| ||||  |||||| | || | |||| | ||||||| ||||||| ||||    
T  37624686 gataatttggtaaaataatcat-tctctttcttttaatcattgcatttcttaatatgagtgtaaacacctaaaacgacactcattttaaaacggatggag 37624784  T
Q  196 tatcatata 204  Q
    ||| |||||    
T  37624785 tataatata 37624793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 46392089 - 46392030
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| |||| |||||||||||||||| |||| | | |||||||| ||||||||||||||||    
T  46392089 agttgattaggataatttggtaaaattacatttctttttctttt-attaatgcatttctta 46392030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 9977 - 9877
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| | ||||||||  ||| |||| |||||||||||||    
T  9977 agttgattaagataatttggtaaaataacatctttttttcttttaattaatgcattttttaatatatgtgtaaaaactttaaacgacattcattttgaaa 9878  T
Q  187 c 187  Q
    |    
T  9877 c 9877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 194
Target Start/End: Complemental strand, 6116019 - 6115920
Alignment:
Q  95 aagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaagga 194  Q
    ||||||| |||||||||||||||||   ||||||||||||||||||||| ||| ||||| |||||||| |||| |||| | |||||||||||||||||||    
T  6116019 aagataagttggtaaaataacatctccctttcttttaattaatgcattttttaatatgtgtgtaaaaaccttaaacgacactcattttgaaacggaagga 6115920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 15227711 - 15227794
Alignment:
Q  98 ataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattt 181  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||| |||| ||||||||    
T  15227711 ataatttgataaaataacatctttttttcttttaattaatgcatttcttaatatgcgtgtaaaaatcttaaacgacattcattt 15227794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 9812303 - 9812403
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||| | |||||| |||| |||  |||||||||||||    
T  9812303 agttgattaggataatttggtaaaataacatctttctttattttaattagtgcatttcttaatatgtgtataaaaaccttaaacggcattcattttgaaa 9812402  T
Q  187 c 187  Q
    |    
T  9812403 c 9812403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 197
Target Start/End: Complemental strand, 34796704 - 34796595
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||| ||||||||||| | | |||||||||||||||||||||||||  |||| |||||||| | || || |||||||||||||||    
T  34796704 agttgattaggataatttgataaaataacatatctctttcttttaattaatgcatttcttaacatgtgtgtaaaaa-cctaaacaatattcattttgaaa 34796606  T
Q  187 cggaaggagta 197  Q
    |||| ||||||    
T  34796605 cggacggagta 34796595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 18290784 - 18290841
Alignment:
Q  27 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttc 84  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  18290784 cctcgttgtcggaggagataaagtggcggctgatacaggaagtgttcgttaaaagttc 18290841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 40399900 - 40399800
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||| | | ||||||||||||||||||||||||| ||| | ||||||||  ||| |||| ||| |||||||||    
T  40399900 agttgattatgataatttggtaaaataacatatctctttcttttaattaatgcatttcttaatatatgtgtaaaaactttaaacgacatttattttgaaa 40399801  T
Q  187 c 187  Q
    |    
T  40399800 c 40399800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 13367966 - 13367862
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaa 191  Q
    |||| |||||| |||||||||||||||||  |||  |||||||||| ||||||||| ||||| |||||||| |||| || ||||| |||||||||||||     
T  13367966 attaggataatatggtaaaataacatcttctttt--tttaattaatacatttcttaatatgtgtgtaaaaaccttaaacaatatttattttgaaacggag 13367869  T
Q  192 ggagtat 198  Q
    |||||||    
T  13367868 ggagtat 13367862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 13496373 - 13496428
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttctta 147  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13496373 attaggataatttggtaaaataacatctttctttcttttaattaatgcatttctta 13496428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 15750352 - 15750253
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||| |||| | |||||||||||||||| |||||||| ||||| ||||||||   || |||| |||||||||||||    
T  15750352 agttgattaggataatttggtaaaataatatctctctttcttttaattaatgtatttcttaatatgtgtgtaaaaactataaacgacattcattttgaaa 15750253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 43970074 - 43969980
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcatttt 182  Q
    |||| |||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||| | ||||||||||| |||  |||||||||    
T  43970074 agttgattaggataatttgataaaataacattttt-tttcttttaattaatgcatttcttagtatgtgtataaaaatcttaaacggcattcatttt 43969980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 34156670 - 34156776
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaa 191  Q
    |||| ||||||||| |||||||||| || |||||||||||||||||||||||| || |||  |||||||||  ||| |||  |||||||||||||| ||     
T  34156670 attatgataatttgataaaataacagctctatttcttttaattaatgcatttcataatatacatgtaaaaactttaaacgccattcattttgaaacagag 34156769  T
Q  192 ggagtat 198  Q
    |||||||    
T  34156770 ggagtat 34156776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 41679442 - 41679542
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||||| || | |||||||||||||||||||||||  |||||| ||| ||||||||| |||| ||| ||||| |||    
T  41679442 agttgattatgataatttggtaaaataacacctctctttcttttaattaatgcatttct--ttatgtgtgt-aaaatcttaaacgacatttattttaaaa 41679538  T
Q  187 cgga 190  Q
    ||||    
T  41679539 cgga 41679542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 2375864 - 2375794
Alignment:
Q  92 attaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaa 162  Q
    ||||||| |||||| ||||||||||||| | ||||||||||||||||||||| ||| ||| | ||||||||    
T  2375864 attaagacaatttgataaaataacatctctctttcttttaattaatgcatttattaatatatgtgtaaaaa 2375794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 31233927 - 31233857
Alignment:
Q  127 ttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||| |||||||| ||||| |||||||||||||  ||| |||||||||||||| || ||||||    
T  31233927 ttttaattaatgtatttcttaatatgtgtgtaaaaatcttaagcgacattcattttgaaacagagggagta 31233857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 197
Target Start/End: Original strand, 515053 - 515142
Alignment:
Q  108 aaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||| ||||||| | ||| ||||||||||| ||||||||| ||||| | |||||| |||| | || ||||||||||||||||| ||||||    
T  515053 aaaaaaacatctctctttattttaattaatacatttcttaatatgtgtataaaaaccttaaatgacattcattttgaaacggagggagta 515142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 24245187 - 24245130
Alignment:
Q  140 atttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||| ||||| ||||||||||||| |||| ||||||||||||||||| ||||||    
T  24245187 atttcttaatatgtgtgtaaaaatcttaaacgacattcattttgaaacggagggagta 24245130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 396247 - 396136
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| | |||||||||||||||||| ||| | | ||||||||||| | ||||||||||| ||||| |||||| | || | |||| | ||||||||||    
T  396247 agttaataaggataatttggtaaaataatcat-tctctttcttttaatcattgcatttcttaatatgtgtgtaaagacctaaaacgacactcattttgaa 396149  T
Q  186 acggaaggagtat 198  Q
    ||||| |||||||    
T  396148 acggatggagtat 396136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 12339880 - 12339952
Alignment:
Q  125 tcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    ||||||||| | ||||||||||| ||||| |||||||| |||| |||| ||||||||||||| ||| ||||||    
T  12339880 tcttttaatcattgcatttcttaatatgtgtgtaaaaaccttaaacgacattcattttgaaatggacggagta 12339952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 6374543 - 6374651
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| ||||||||||||||||||||||||  ||| |||||||||||| ||||| || ||| | | |||||| |||| ||||  |||||||| |||    
T  6374543 agttgattatgataatttggtaaaataacatctt--ttttttttaattaatgtatttcctaatatatttataaaaaccttaaacgacgttcattttaaaa 6374640  T
Q  187 cggaaggagta 197  Q
    | ||| |||||    
T  6374641 cagaatgagta 6374651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 29312196 - 29312105
Alignment:
Q  106 gtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggagta 197  Q
    |||||||||||||| | |||||||||||||||| |||| ||| | ||| ||| |||| |||| |||| ||| ||||||||| ||| ||||||    
T  29312196 gtaaaataacatctctttttcttttaattaatgtattttttaatctgtgtgtgaaaaccttaaacgacatttattttgaaatggagggagta 29312105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 42179225 - 42179300
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaa 162  Q
    ||||||||| |||||||| |||||||| ||||  | |||||||||||||||| |||| ||| ||||| ||||||||    
T  42179225 agttaattatgataatttagtaaaatatcatcactctttcttttaattaatgtattttttaatatgtgtgtaaaaa 42179300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 197
Target Start/End: Original strand, 43724502 - 43724612
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| || ||||||||||||||||| ||| | | ||||||||||| | ||||||| ||| || || |||||| |||| | |||| | ||||||||||    
T  43724502 agttaataaaaataatttggtaaaataatcat-tctctttcttttaatcattgcattttttagtacgtgtgtaaacatctaaaacgacactcattttgaa 43724600  T
Q  186 acggaaggagta 197  Q
    ||||||||||||    
T  43724601 acggaaggagta 43724612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 33746137 - 33746063
Alignment:
Q  112 taacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||||| ||| ||||||||||||||||||||| ||| ||||  |||||||| |||| | || |||||||||||||    
T  33746137 taacatatttctttcttttaattaatgcattttttaatatgcgtgtaaaaaccttaaatgacattcattttgaaa 33746063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 39765893 - 39765782
Alignment:
Q  87 agttaattaagataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaa 185  Q
    ||||||| | |||||||||||||||||| ||| | | ||||||||||| | || |||||||| ||||| |||||| | || | |||| | ||||||||||    
T  39765893 agttaataaggataatttggtaaaataagcat-tctctttcttttaatcattgtatttcttaatatgtgtgtaaacacctaaaacgacactcattttgaa 39765795  T
Q  186 acggaaggagtat 198  Q
    ||||| |||||||    
T  39765794 acggagggagtat 39765782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 190
Target Start/End: Complemental strand, 15160479 - 15160376
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    ||||||| | |||||||||||||||||||   | | ||||||||||| | ||||||||||| ||||| |||||| | || | | || | |||||||||||    
T  15160479 agttaataaggataatttggtaaaataaccattctctttcttttaatcattgcatttcttaatatgtgtgtaaacacctaaaatgacactcattttgaaa 15160380  T
Q  187 cgga 190  Q
    ||||    
T  15160379 cgga 15160376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 5295428 - 5295327
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||||||||||||  || | | ||||||||||| ||| ||||||||| ||||| ||||||||  ||| || | ||||||||| |||    
T  5295428 agttgattaggataatttggtaaaatat-atatctctttcttttaatcaatacatttcttaatatgtgtgtaaaaactttaaacaacattcattttaaaa 5295330  T
Q  187 cgg 189  Q
    |||    
T  5295329 cgg 5295327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0521 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 4929 - 4986
Alignment:
Q  27 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttc 84  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4929 cctcgttgccggaggagacaaagtggcggctgatataggcagtgttcgttaaaagttc 4986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 4695 - 4796
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||| |||||||||||||||||||| |||  |||| ||||||||||||||| ||||| ||||||||| ||| |||| ||| ||||| |||    
T  4695 agttgattaggatagtttggtaaaataacatcttttttt--tttagttaatgcatttcttaatatgtgtgtaaaaattttaaacgacatttattttaaaa 4792  T
Q  187 cgga 190  Q
    ||||    
T  4793 cgga 4796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 709 - 611
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||||||||||||||||||||||||||| | ||| | ||||| |||| ||||||||  || | ||||||||||||| |||| |||||||||||||    
T  709 agttgattaagataatttggtaaaataacatctct-tttttattaataaatgtatttcttaacatatgtgtaaaaatcttaaacgacattcattttgaaa 611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 197
Target Start/End: Complemental strand, 3833 - 3733
Alignment:
Q  97 gataatttggtaaaataa-catctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacggaaggag 195  Q
    |||||||||||||||||| ||| ||| ||||||||||| | ||||||||||||||||| |||||| | || | |||| | ||||||| ||||||||||||    
T  3833 gataatttggtaaaataatcat-tttctttcttttaatcattgcatttcttattatgtgtgtaaagacctaaaacgacactcattttaaaacggaaggag 3735  T
Q  196 ta 197  Q
    ||    
T  3734 ta 3733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 190
Target Start/End: Original strand, 4281 - 4374
Alignment:
Q  97 gataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaacgga 190  Q
    |||||||||||||||||| |||| ||||||||||  |||||  |||||||| ||||| |||||||| |||| || | ||||||||| |||||||    
T  4281 gataatttggtaaaataatatctatatttcttttctttaatatatttcttaatatgtgtgtaaaaaccttaaacaaaattcattttaaaacgga 4374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 187
Target Start/End: Original strand, 9675 - 9772
Alignment:
Q  87 agttaattaagataatttggtaaaataacatctttatttcttttaattaatgcatttcttattatgtatgtaaaaatcttagacgatattcattttgaaa 186  Q
    |||| |||| |||||||| ||||||||||||||  |||| |||||||||||| |||||||| ||||| || ||||| |||| |||| ||| || ||||||    
T  9675 agttgattaggataatttagtaaaataacatct--attt-ttttaattaatgtatttcttaatatgtgtgcaaaaaccttaaacgacatttatcttgaaa 9771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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