View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_44 (Length: 310)
Name: NF2703_low_44
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 173 - 287
Target Start/End: Complemental strand, 55062305 - 55062191
Alignment:
| Q |
173 |
cagccgaactgatattaccgtgcttctctctatggccaggatccttgatttcagtcttcttcacgcccaggaaaagttgatcatgtttagaatcatcttc |
272 |
Q |
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| T |
55062305 |
cagccgaactgatattaccgtgcttctctctatggccaggatccttgatttcagtcttcttcacgcccaggaaaagttgatcatgtttagaatcatcttc |
55062206 |
T |
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| Q |
273 |
actttcatcatctac |
287 |
Q |
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||||||||||||||| |
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| T |
55062205 |
actttcatcatctac |
55062191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 55062479 - 55062361
Alignment:
| Q |
1 |
agtgaggcttgtcattttgtccttttatcaacttttgatttattgatatagccattctaagacacacccacattaattagaatttcatttattttcttaa |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55062479 |
agtgaggcttgtcattttgtacttttatcaacttttgatttattgatatagccattctaagacacacccacattaattagaatttcatttattttcttaa |
55062380 |
T |
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| Q |
101 |
agggtaaagattttacagg |
119 |
Q |
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| T |
55062379 |
agggtaaagattttacagg |
55062361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 40932388 - 40932273
Alignment:
| Q |
178 |
gaactgatattaccgtgcttctctctatggccaggatccttgatttcagtcttcttcacgccca-ggaaa-----agttgatcatgtttagaatcatctt |
271 |
Q |
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| T |
40932388 |
gaactgatattactgtgcttctctctatggctagaatcaatgctctcgatcttcttcacatccatggaaagttaaagttgatcctgtttagaatcatctt |
40932289 |
T |
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| Q |
272 |
cactttcatcatctac |
287 |
Q |
| |
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|| ||||||||||||| |
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| T |
40932288 |
cattttcatcatctac |
40932273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 40940405 - 40940350
Alignment:
| Q |
229 |
ttcttcacgcccaggaaaagttgatcatgtttagaatcatcttcactttcatcatc |
284 |
Q |
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||||||||| ||| | |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
40940405 |
ttcttcacgtccaaggaaagttgatcatgtatagaatcatcttctctttcatcatc |
40940350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 40922432 - 40922375
Alignment:
| Q |
228 |
cttcttcacgcccaggaaaagttgatcatgtttagaatcatcttcactttcatcatct |
285 |
Q |
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|||||||||| ||| | |||||||||||||||||||||||| || |||| |||||||| |
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| T |
40922432 |
cttcttcacgtccaaggaaagttgatcatgtttagaatcatatttacttgcatcatct |
40922375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 272
Target Start/End: Complemental strand, 40906292 - 40906249
Alignment:
| Q |
229 |
ttcttcacgcccaggaaaagttgatcatgtttagaatcatcttc |
272 |
Q |
| |
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||||||||| ||| | |||||||||||||||||||||||||||| |
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| T |
40906292 |
ttcttcacgtccaaggaaagttgatcatgtttagaatcatcttc |
40906249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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