View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_45 (Length: 310)
Name: NF2703_low_45
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 40302310 - 40302588
Alignment:
| Q |
18 |
acctattatagaacaaaaaggatccagagaataaacaaaaaattatgatccagagttcaagaagtatttgattgttcaatttaaaatcttttactcatct |
117 |
Q |
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| T |
40302310 |
acctattatagaacaaaaaggatccagagaataaacaaaaaattatgatccagagttcaagaagtatttgattgttcaatttaaaatattttactcatct |
40302409 |
T |
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| Q |
118 |
ttatgttggcagtcttttaaagagctgcaagcagagaaaggtactgtatctgttatcacgttcttactctttctgtcattcaatctcaaacctcagtata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40302410 |
ttatgttggcagtcttttaaagagctgcaagcagagaaaggtaatgtatctgttatcacgttcttactttttctgtcattcaatctcaaacctcagtata |
40302509 |
T |
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| Q |
218 |
agatgacttcgtggaaatcttttaatgcattcgatcacattcacatcaaatatccgatatgtttgaaaactagtataat |
296 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40302510 |
agatgacttcatggatatcttttaatgcattcgatcacattcacatcaactatccgatatgtttgaaaactagtataat |
40302588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 25574424 - 25574507
Alignment:
| Q |
24 |
tatagaacaaaaaggatccagagaataaacaaaaaattatgatccagagttcaagaagtatttgattgttcaatttaaaatctt |
107 |
Q |
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|||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
25574424 |
tatagaacaaaaaggatccagaaaataaacaaaatattatgatctagagttcaagaagtatttgattgttcagtttaaaatctt |
25574507 |
T |
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