View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_48 (Length: 301)
Name: NF2703_low_48
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_48 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 15002312 - 15002029
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002312 |
acacaagcctttgttatttctcagtgcttcaattggagctctttcgaaagctgtaatgtttggagtcggaccctccaactggttgtaagatatatcaaca |
15002213 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002212 |
gttgtcaagcttaacatatcaacaaagctttagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
15002113 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15002112 |
ttgctggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaattggccaaactcaacaggaatgt |
15002029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 15037221 - 15036942
Alignment:
| Q |
5 |
aagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaacagttg |
104 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037221 |
aagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaatgtttggaatcggaccctccaactggttgtaagatatatcaacagttg |
15037122 |
T |
|
| Q |
105 |
tcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037121 |
tcaagcttaacatatcaacaaagcttaagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgc |
15037022 |
T |
|
| Q |
205 |
tggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15037021 |
tggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaattggccaaactcaacaggaatgt |
15036942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 283
Target Start/End: Complemental strand, 15011201 - 15010922
Alignment:
| Q |
5 |
aagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaacagttg |
104 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15011201 |
aagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaacatttggaatcggaccctccaattggttgtaagatatatcaacagttg |
15011102 |
T |
|
| Q |
105 |
tcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011101 |
tcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgc |
15011002 |
T |
|
| Q |
205 |
tggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15011001 |
tggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaactcaacaggaatgt |
15010922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 15017320 - 15017037
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
15017320 |
acacaagcccttgttatttgtcaatgcttcaattggagctcttccgaaagctgtaatgtttggagtcggaccctccaactggttgtaagatacatcaaca |
15017221 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017220 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
15017121 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgt |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15017120 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaactcaacaggaatgt |
15017037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 272
Target Start/End: Complemental strand, 15032659 - 15032392
Alignment:
| Q |
5 |
aagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaacagttg |
104 |
Q |
| |
|
||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032659 |
aagcctttgttatttgtcaatgcttcaattggagcttttttgaaagctgtaatgtttggaattggaccctccaactggttgtaagatatatcaacagttg |
15032560 |
T |
|
| Q |
105 |
tcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcattgc |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
15032559 |
tcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagcgatttaactgcccaagcattga |
15032460 |
T |
|
| Q |
205 |
tggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15032459 |
tggtatggttccattcataaaattcccactaagatcaagattttcaataacattcaattgggcaaact |
15032392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 2 - 269
Target Start/End: Original strand, 14522532 - 14522799
Alignment:
| Q |
2 |
cacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaacag |
101 |
Q |
| |
|
|||||||||||||||||||| | ||||||| ||||||||||| ||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
14522532 |
cacaagcctttgttatttctaaatgcttcaactggagctctttggaatgctgtaatgtttggaattggaccctccaaccggttgtaagatatatcaacag |
14522631 |
T |
|
| Q |
102 |
ttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagcat |
201 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
14522632 |
ttgtcaaacttaacatatcaaaaaagcttaagggaatgttaccatagagattattatgtgagagattcaatgtttctaagcgatttaactgtccaagcat |
14522731 |
T |
|
| Q |
202 |
tgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaa |
269 |
Q |
| |
|
|| ||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
14522732 |
tgttggtatggttccattcaaaaaattcccgctaagatcaagatcttcaataacattcaattgaccaa |
14522799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 86 - 272
Target Start/End: Complemental strand, 15025237 - 15025051
Alignment:
| Q |
86 |
taagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgat |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15025237 |
taagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagcgat |
15025138 |
T |
|
| Q |
186 |
ttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15025137 |
ttaactgcccaagcattgatggtatggttccattcataaaattcccactaagatcaagattttcaataacattcaattgggcaaact |
15025051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 14468008 - 14467737
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| ||||||| || ||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
14468008 |
acacaagtctttgttgtttctcagtgcttcaattggagcctgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatatctaca |
14467909 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
||||||||||||||||||||||| |||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
14467908 |
gttgtcaagcttaacatatcaactgagctgaagagaatggtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaaca |
14467809 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||||||| |||||||| |||| | ||||| ||||||||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
14467808 |
ttgctggaatggttccgttcaaaaaattctcactaagatcaagatcttcaagaacatttaattggccaaact |
14467737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 14482190 - 14481919
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||| | | | ||| |||| ||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
14482190 |
acacaagtctttgttgtttctcagtgcttcaattggagttttctggaaggctggaatgcttggaatcggaccctccaactggttgtacgatatatctaca |
14482091 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
||| ||||||||||||| | | || | || |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
14482090 |
gttatcaagcttaacatctaaccatatctgaagggaatggtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgtccaaaca |
14481991 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||||||| |||||||| |||| | ||||| ||||||||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
14481990 |
ttgctggaatggttccgttcaaaaaattctcactaagatcaagatcttcaagaacatttaattggccaaact |
14481919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 14532652 - 14532935
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| ||| ||| ||||||||||||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
14532652 |
acacaagcctttgttatttctaagtgcttcaattggagctttttggaaggctgtaatgcttggaattggaccctccaattggttgtatgatatatcaaca |
14532751 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
|||||||||||||||| | | | |||| | |||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
14532752 |
attgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaagattcaatgtttgtaagtgatttaactgtccaagca |
14532851 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgt |
283 |
Q |
| |
|
||| ||||||||||||| ||||| ||| ||||||||||||||| ||||||||| || |||||| |||||| ||||||||||| |
|
|
| T |
14532852 |
ttgatggtatggttccactcataacattttcactaagatcaagatcttcaataacctttaattggtcaaactcaacaggaatgt |
14532935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 14504187 - 14503916
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||| ||||||| ||||||||||||||| |||||||| || ||| |||| |||||||||||||||||||||||| |||||||| |||||||||| | |
|
|
| T |
14504187 |
acacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaattggttgtatgatatatcaata |
14504088 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
|||||||||||||||||||| || |||| |||| || |||||||| ||||| |||||||||||||||||||||||||| ||||||||| |||| || |
|
|
| T |
14504087 |
attgtcaagcttaacatatcaccagagctaaaggggatcgtaccagacagattattatgtgagagattcaatgtttctaaatgatttaacactccaaaca |
14503988 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||| ||||| |||||||||||| |||| ||||| |||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
14503987 |
ttgaaggtatcgttccattcataaaatttccactgagatcaagatcttcaataacatttaatcggccaaact |
14503916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 164 - 255
Target Start/End: Complemental strand, 15040801 - 15040710
Alignment:
| Q |
164 |
agattcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataac |
255 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15040801 |
agattcaatgtttctaagcgatttaactgtccaagcattgttggtatggttccattcaaagaattcccactaagatcaagattttcaataac |
15040710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 15040949 - 15040807
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||| ||| | ||| | || ||| ||||||| ||||||| ||| |||||| | |||||||||||| |
|
|
| T |
15040949 |
acacaagcctttgttatttcttaatgcttcaaatggggcttgtaggaaggatgaaatttttggaattggacccttcaattggttgcatgatatatcaaca |
15040850 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtac |
143 |
Q |
| |
|
|||||||||| | |||| ||| || || | |||||||||||| |
|
|
| T |
15040849 |
gttgtcaagcctgacatctcaccataggtcaagggaatggtac |
15040807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 12984 - 12713
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || ||| |||| |||| | ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
12984 |
acacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttaggaatcggaccctccaattggttgtatgatatatcaaca |
12885 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
|||||||||||||||| | | | |||| | |||||||| ||||| ||||| |||||||| ||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
12884 |
attgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaactgtccaagca |
12785 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||| |||||||||||| |||| | |||| |||||||| ||||||| ||||||||| | ||||||||||||| |
|
|
| T |
12784 |
ttgatggtatggttccgttcaaaaaatttccactaaggtcaagatcttcaataacttctaattggccaaact |
12713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 6696 - 6425
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||| ||||||| |||| |||| ||||||| ||||| || || |||||||| |||||||||| | |
|
|
| T |
6696 |
acacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaattggttgtatgatatatcaata |
6597 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
||||| |||||| |||| ||| || || | |||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
6596 |
gttgttaagcttgacatctcaccataggtcaagggaatggtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctccaagca |
6497 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||| ||||||||||||||||| | |||| | |||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
6496 |
ttgttggtatggttccattcaaaacattctcgctaagatcaagattttcaataattttcaattgtccaaact |
6425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 13627 - 13356
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || ||| |||| |||| | ||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
13627 |
acacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttaggaatcggaccctccaattggttgtatgatatatcaaca |
13528 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
|||||||||||||||| | | | |||| | |||||||| ||||| ||||| |||||||| ||||||||||||| || |||||||||||| ||||||| |
|
|
| T |
13527 |
attgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaactgtccaagca |
13428 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||| |||||||||||| |||| | |||| |||||||| ||||||| ||||||||| | ||||||||||||| |
|
|
| T |
13427 |
ttgatggtatggttccgttcaaaaaatttccactaaggtcaagatcttcaataacttctaattggccaaact |
13356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 7340 - 7069
Alignment:
| Q |
1 |
acacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatatcaaca |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||| ||||||| |||| |||| ||||||| ||||| || || |||||||| |||||||||| | |
|
|
| T |
7340 |
acacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaattggttgtatgatatatcaata |
7241 |
T |
|
| Q |
101 |
gttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggccaagca |
200 |
Q |
| |
|
||||| |||||| |||| ||| || || | |||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
7240 |
gttgttaagcttgacatctcaccataggtcaagggaatggtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctccaagca |
7141 |
T |
|
| Q |
201 |
ttgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact |
272 |
Q |
| |
|
||| ||||||||||||||||| | |||| | |||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
7140 |
ttgttggtatggttccattcaaaacattctcgctaagatcaagattttcaataattttcaattgtccaaact |
7069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 219
Target Start/End: Complemental strand, 16103018 - 16102867
Alignment:
| Q |
68 |
ggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagat |
167 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||| ||||||||||||||| | | ||||||| |||||||| ||||| ||||| |||||||||| || |
|
|
| T |
16103018 |
ggaccctccaattggttatatgatatatcaacagatgtcaagcttaacatttgatcaaagctagagggaataaagccagaaagattattatgtgagatat |
16102919 |
T |
|
| Q |
168 |
tcaatgtttctaagtgatttaactggccaagcattgctggtatggttccatt |
219 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||| |||||| |||||||| |
|
|
| T |
16102918 |
tcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatt |
16102867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 68 - 270
Target Start/End: Complemental strand, 14606036 - 14605834
Alignment:
| Q |
68 |
ggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagat |
167 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||| ||| ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| || |
|
|
| T |
14606036 |
ggaccctccaattggttatatgatatatcaacagatgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatat |
14605937 |
T |
|
| Q |
168 |
tcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggcc |
267 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||| |||||| ||||||| || | |||| ||||| ||||| || |||||| ||||| ||||| || |
|
|
| T |
14605936 |
tcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtcc |
14605837 |
T |
|
| Q |
268 |
aaa |
270 |
Q |
| |
|
||| |
|
|
| T |
14605836 |
aaa |
14605834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 270
Target Start/End: Complemental strand, 16025213 - 16025011
Alignment:
| Q |
68 |
ggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagat |
167 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||| || ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| || |
|
|
| T |
16025213 |
ggaccctccaattggttatatgatatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatat |
16025114 |
T |
|
| Q |
168 |
tcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggcc |
267 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||| |||||| ||||||| || | |||| ||||| ||||| || |||||| ||||| ||||| || |
|
|
| T |
16025113 |
tcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtcc |
16025014 |
T |
|
| Q |
268 |
aaa |
270 |
Q |
| |
|
||| |
|
|
| T |
16025013 |
aaa |
16025011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 243
Target Start/End: Complemental strand, 16172695 - 16172520
Alignment:
| Q |
68 |
ggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagat |
167 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||| || || || ||||| | | | ||||| |||||||| ||||| ||||| |||||||||| || |
|
|
| T |
16172695 |
ggaccttccaattggttatatgatatatcaacagacgttaaactgaacatctgatcgaagctagagggaataaatccagaaagattattatgtgagatat |
16172596 |
T |
|
| Q |
168 |
tcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaag |
243 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||| |||||| |||||||| | | |||| ||||| |||||||| |
|
|
| T |
16172595 |
tcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatttaaaaaatttccactcagatcaag |
16172520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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