View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_50 (Length: 260)
Name: NF2703_low_50
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 37617795 - 37618029
Alignment:
| Q |
16 |
caatgccaacccaccagccatcattgtgaaaagcatcaacttcgtcgaaaaatttgaactcagcaacatcatcagtctttggtggacgaggcctaatatg |
115 |
Q |
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| T |
37617795 |
caataccaacccaccagccatcattgtgaaaagcatcaacttcgtcgaaaaatttgaactcagcaacatcatcagtctttggtggacgaggcctaatatg |
37617894 |
T |
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| Q |
116 |
ccggatatccaactcctctctcaaaggcttagaatcatcatcgatcagggcctcatactcgacgacaaacctaaaatgtcgctttaattcaacgatggtg |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37617895 |
ccggatattcaactcctctctcaaaggcttagaatcatcatcgatcagggcctcatactcgacgacaaacctaaaatgtcgctttaattcaacgatggtg |
37617994 |
T |
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| Q |
216 |
ccaagaaaccaagcccctttgagacctttttcatc |
250 |
Q |
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|||||||||||||||||||||||||| |||||||| |
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| T |
37617995 |
ccaagaaaccaagcccctttgagacccttttcatc |
37618029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 138
Target Start/End: Original strand, 37631053 - 37631170
Alignment:
| Q |
21 |
ccaacccaccagccatcattgtgaaaagcatcaacttcgtcgaaaaatttgaactcagcaacatcatcagtctttggtggacgaggcctaatatgccgga |
120 |
Q |
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||||||||||| ||||| || | | ||||||||||||| || | || || |||| |||||| ||| |||| ||||||||||||||||| || ||| ||| |
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| T |
37631053 |
ccaacccaccacccatcgttataataagcatcaacttcatcaagaacttcaaactgagcaacttcagcagtttttggtggacgaggcctcatttgcagga |
37631152 |
T |
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| Q |
121 |
tatccaactcctctctca |
138 |
Q |
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|||| | |||||||||| |
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| T |
37631153 |
tatcaacatcctctctca |
37631170 |
T |
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