View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_51 (Length: 258)
Name: NF2703_low_51
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_51 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 29641113 - 29640874
Alignment:
| Q |
5 |
caaggaggggtggccatttagatgattatgtgtttgttt-gccaacgtcattcctccaagacaatcatatatcgtgccttgtagaaaggaggaagaattt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29641113 |
caaggaggggtggccatttagatgattatgtgtttgtttcgccaacgtcattcctccaagacaatcatatatcgtgccttgtagaaaagaggaagaattt |
29641014 |
T |
|
| Q |
104 |
cagaatgacggatttgagagccaattgtagcatatgcatccgagagacgagaaatgagctgaagaaccatacgtttgttagaaacaggggcaccaacatg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29641013 |
cagaatgacggatttgagagccaattgtagcatatgcatcagagagacgagaaatgagctgaagaaccatacgtttgttagaaacaggggcaccaacatg |
29640914 |
T |
|
| Q |
204 |
agccaaatgatcataaagatact-aatgtatttgcagtat |
242 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29640913 |
agacaaatgatcataaagatactaaatgtatttgcagtat |
29640874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 58 - 242
Target Start/End: Complemental strand, 55155320 - 55155135
Alignment:
| Q |
58 |
tccaagacaatcatatatcgtgccttgtagaaaggaggaagaatttcagaatgacggatttgagagccaattgtagcatatgcatccgagagacgagaaa |
157 |
Q |
| |
|
|||||||||| |||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||| | | ||| |
|
|
| T |
55155320 |
tccaagacaaccatagatcgagccttgtagaaaggaggcagaatttcagaatgacgaatttgagagccaactgtagcataagcatcagagaggccataaa |
55155221 |
T |
|
| Q |
158 |
tgagctgaagaaccatacgtttgttagaaacaggggcaccaacatgagccaaatgatcataaagatac-taatgtatttgcagtat |
242 |
Q |
| |
|
|||| |||||||||||||||| ||| |||||||| |||||||||| || ||| |||||| ||||| || |||||| || ||||||| |
|
|
| T |
55155220 |
tgagttgaagaaccatacgttcgttggaaacaggtgcaccaacattagacaattgatcagaaagagacttaatgtgttggcagtat |
55155135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 127
Target Start/End: Original strand, 12082899 - 12082947
Alignment:
| Q |
79 |
gccttgtagaaaggaggaagaatttcagaatgacggatttgagagccaa |
127 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
12082899 |
gccttgtagaaaggaggcagaatttcagaatgacgaatttgagagccaa |
12082947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University