View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_52 (Length: 257)
Name: NF2703_low_52
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26990969 - 26991207
Alignment:
| Q |
1 |
aataaggtaaccaatcatgaactacaaagaccaaaacactacatttccacccaaaacctaagatcattagccatatgaattatctttattctatatcatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26990969 |
aataaggtaaccaatcatgaactacaaagaccaaaacactacatttccacccaaaacctaagatcattagccatatgaattatctttattctatatcatt |
26991068 |
T |
|
| Q |
101 |
agtttggctcatcctcaaccggtgtgagactaaccactcacatttgaatacaagatacccattcacaaacacattcatcaaaattttctatatgcgaatn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26991069 |
agtttggctcatcctcaaccggtgtgagactaaccactcacatttgaatacaagatacccattcacaaacacattcatcaaaattttctatatgcgaat- |
26991167 |
T |
|
| Q |
201 |
nnnnnncaaacctgtttagcaagggcagtagcaaccatat |
240 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
26991168 |
aaaaaacaaacctgtttagcaagggcagtagcaaccatat |
26991207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 189
Target Start/End: Original strand, 27005434 - 27005591
Alignment:
| Q |
34 |
aaacactacatttccacccaaaacctaagatcattagccatatgaattatctttattctatatcattagtttggctcatcctcaaccggtgtgagactaa |
133 |
Q |
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| T |
27005434 |
aaacaccacatttccaccaaaaaccttagagcattacccatatgaatcatctctcttctatatcattagtttagcccattctcaactagtgtgagactaa |
27005533 |
T |
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| Q |
134 |
ccactcacatttgaatacaagatacccattcacaaa--cacattcatcaaaattttct |
189 |
Q |
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| T |
27005534 |
ccactcacatttgaatacaagctacccgttcacaaatgcatattcatcaatattttct |
27005591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 27005620 - 27005653
Alignment:
| Q |
207 |
caaacctgtttagcaagggcagtagcaaccatat |
240 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
27005620 |
caaacctgcttagcaagggcagtagcaaccatat |
27005653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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