View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_53 (Length: 257)
Name: NF2703_low_53
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_53 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 2511249 - 2511486
Alignment:
| Q |
17 |
agattttgggttgaacgaggatttgttggttacaaacactgtcgaacaaacaagtgcctgtactttgaaggaggatcccatggtcttatctgatatagtg |
116 |
Q |
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| T |
2511249 |
agattttgggttgaacga---tttgttggttacaaacactgttgaacaaacaagtgactgtactttgaaggaggatcccatggtcttatctgatatagtg |
2511345 |
T |
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| Q |
117 |
gatggggataatttggccaacgatgaacctgcaaaagtggaattggttggcatcgaatctatggatacggaatttgcaactgaagactgtacattgaata |
216 |
Q |
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| T |
2511346 |
gatggggataatttggccaacgatgaacctgcaaaagtggaattggttggcatcgaatctatggatacagaatttgcaactgaagactgtaccttgaata |
2511445 |
T |
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| Q |
217 |
aggaagatcgcgtggtcccatctcaacaattggatctgcct |
257 |
Q |
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| T |
2511446 |
aggaagatcgcgtggtcccatctcaacaattggatctgcct |
2511486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 2495151 - 2495382
Alignment:
| Q |
19 |
attttgggttgaacgaggatttgttggttacaaacactgtcgaacaaacaagtgcctgtactttgaag---gaggatcccatggtcttatctgatatagt |
115 |
Q |
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| T |
2495151 |
attttgagttgaacgaggatttgttggttacaaacactgttgaacaaacaagtgactgtagtttgaagaaggaggatccgatgttcttatctgatcaagt |
2495250 |
T |
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| Q |
116 |
ggatggggataatttggccaacgatgaacctgcaaaagtggaattggttggcatcgaatctatggatacggaatttgcaactgaagactgtacattgaat |
215 |
Q |
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| T |
2495251 |
ggatggggatagtttggctaacgatgaacctgcaaaagtggaattggttggcatggaaactatggatacagaattggcacctgaagactgtagattgaaa |
2495350 |
T |
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| Q |
216 |
aaggaagatcgcgtggtcccatctcaacaatt |
247 |
Q |
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| T |
2495351 |
aaggatgttaccgtggtctcatctcatcaatt |
2495382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 2511648 - 2511724
Alignment:
| Q |
125 |
taatttggccaacgatgaacctgcaaaagtggaattggttggcatcgaatctatggatacggaatttgcaactgaag |
201 |
Q |
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| T |
2511648 |
taatttggcgaaagatgaacctgcaaaactggaattggcggggatggaaactttggatacggaatttgcaacagaag |
2511724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 241
Target Start/End: Original strand, 4257531 - 4257723
Alignment:
| Q |
52 |
acactgtcgaacaaacaagtgcctgtactttgaag---gaggatcccatggtcttatctgatatagtggatggggataatttggccaacgatgaacctgc |
148 |
Q |
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| T |
4257531 |
acactgttgaacaaacaagtgactgtagtttgaagaaggaggatcctgtggtcttatctgatcaagtggatgtgggtagttttgccaacgatgaacctgc |
4257630 |
T |
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| Q |
149 |
aaaagtggaattggttggcatcgaatctatggatacggaatttgcaactgaagactgtacattgaataaggaagatcgcgtggtcccatctca |
241 |
Q |
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| T |
4257631 |
aaaagtggaattggtgggcgtagaagctatggatattagttttgaaactgaagactgtagcttgaaaaaggaagatcctgtggtctcatctca |
4257723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 257
Target Start/End: Original strand, 4257698 - 4257871
Alignment:
| Q |
84 |
aaggaggatcccatggtcttatctgatatagtggatggggataatttggccaacgatgaacctgcaaaagtggaattggttggcatcgaatctatggata |
183 |
Q |
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| T |
4257698 |
aaggaagatcctgtggtctcatctcatcgagtggatggggatattttggttaacgatgaagcttcaaaagtggaattggtgggcatggaagctgtggata |
4257797 |
T |
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| Q |
184 |
cggaatttgcaactgaagactgtacattgaataaggaagatcgcgtggtcccatctcaacaattggatctgcct |
257 |
Q |
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| T |
4257798 |
tggaattggaaactgaagactgtagcttgagaaaggaagatcccatggtctcatctcatcaattggatatgcct |
4257871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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