View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2703_low_55 (Length: 250)

Name: NF2703_low_55
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2703_low_55
NF2703_low_55
[»] chr4 (16 HSPs)
chr4 (1-187)||(37247290-37247476)
chr4 (111-176)||(22425224-22425289)
chr4 (1-175)||(53455163-53455335)
chr4 (114-176)||(43968574-43968636)
chr4 (111-176)||(2062217-2062282)
chr4 (111-176)||(3161946-3162011)
chr4 (111-167)||(6077762-6077818)
chr4 (122-176)||(38298391-38298445)
chr4 (111-172)||(1586312-1586373)
chr4 (111-172)||(5834026-5834087)
chr4 (111-176)||(37978161-37978226)
chr4 (111-174)||(30599603-30599666)
chr4 (211-250)||(37247500-37247539)
chr4 (125-176)||(40982674-40982725)
chr4 (126-168)||(55970002-55970044)
chr4 (112-156)||(32212902-32212946)
[»] chr8 (9 HSPs)
chr8 (1-176)||(7176779-7176952)
chr8 (1-176)||(14729001-14729176)
chr8 (111-176)||(6106958-6107023)
chr8 (111-176)||(8644262-8644327)
chr8 (111-176)||(44103982-44104047)
chr8 (111-172)||(30905742-30905803)
chr8 (112-176)||(7206834-7206898)
chr8 (112-176)||(31511523-31511587)
chr8 (16-95)||(17793192-17793271)
[»] chr5 (13 HSPs)
chr5 (16-176)||(8433848-8434008)
chr5 (111-176)||(9784796-9784861)
chr5 (111-176)||(15635800-15635865)
chr5 (111-176)||(606611-606676)
chr5 (111-176)||(13542414-13542479)
chr5 (114-176)||(19495211-19495273)
chr5 (111-176)||(32273820-32273885)
chr5 (111-171)||(33494940-33495000)
chr5 (111-166)||(14089962-14090017)
chr5 (118-176)||(2552275-2552333)
chr5 (121-174)||(28837839-28837892)
chr5 (111-169)||(30471608-30471666)
chr5 (111-147)||(39324287-39324323)
[»] chr1 (17 HSPs)
chr1 (1-176)||(5300278-5300449)
chr1 (111-176)||(32827108-32827173)
chr1 (111-172)||(33259647-33259708)
chr1 (111-172)||(33279806-33279867)
chr1 (111-161)||(6704357-6704407)
chr1 (113-166)||(7712434-7712487)
chr1 (111-176)||(19512736-19512801)
chr1 (113-166)||(42400864-42400917)
chr1 (1-61)||(6704249-6704308)
chr1 (16-95)||(4447887-4447966)
chr1 (122-171)||(46592196-46592245)
chr1 (120-172)||(31206542-31206594)
chr1 (1-45)||(38865462-38865506)
chr1 (111-174)||(33727105-33727168)
chr1 (134-176)||(35615727-35615769)
chr1 (1-46)||(19512841-19512886)
chr1 (1-58)||(35266051-35266108)
[»] chr3 (14 HSPs)
chr3 (111-176)||(31153587-31153652)
chr3 (1-98)||(47967996-47968092)
chr3 (111-176)||(28963521-28963586)
chr3 (111-176)||(49615599-49615664)
chr3 (120-172)||(376951-377003)
chr3 (16-95)||(14476991-14477070)
chr3 (111-176)||(42760805-42760870)
chr3 (113-172)||(7885807-7885866)
chr3 (121-176)||(7932567-7932622)
chr3 (111-172)||(3432752-3432813)
chr3 (111-176)||(51305704-51305769)
chr3 (111-182)||(38138442-38138513)
chr3 (120-158)||(52120214-52120252)
chr3 (118-172)||(53143392-53143446)
[»] chr2 (9 HSPs)
chr2 (111-176)||(5552560-5552625)
chr2 (111-176)||(9707477-9707542)
chr2 (1-176)||(449152-449324)
chr2 (126-176)||(9976844-9976894)
chr2 (111-176)||(12392217-12392282)
chr2 (111-176)||(44277533-44277597)
chr2 (9-87)||(9976725-9976802)
chr2 (111-175)||(43301804-43301868)
chr2 (123-176)||(449384-449437)
[»] chr7 (9 HSPs)
chr7 (1-96)||(46209099-46209193)
chr7 (111-172)||(47841605-47841666)
chr7 (112-176)||(5355761-5355825)
chr7 (111-176)||(29629205-29629270)
chr7 (111-167)||(30833849-30833905)
chr7 (16-94)||(33987679-33987756)
chr7 (121-171)||(38223836-38223886)
chr7 (118-172)||(42710689-42710743)
chr7 (111-172)||(17604026-17604087)
[»] chr6 (4 HSPs)
chr6 (16-176)||(29383747-29383906)
chr6 (111-172)||(11703365-11703426)
chr6 (111-176)||(6794113-6794178)
chr6 (113-158)||(32025877-32025922)
[»] scaffold0578 (2 HSPs)
scaffold0578 (111-176)||(10137-10202)
scaffold0578 (1-46)||(10052-10097)
[»] scaffold1114 (1 HSPs)
scaffold1114 (16-147)||(2192-2320)
[»] scaffold0154 (1 HSPs)
scaffold0154 (111-176)||(26799-26864)
[»] scaffold0067 (1 HSPs)
scaffold0067 (111-172)||(129-190)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 37247290 - 37247476
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaatgggtcttaatagttagaccttgaatcttttaagacccccaag 100  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||   |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37247290 tttaattgccatgaaaattattattttaataaaaaatgatgtggatccatttaagaatggggcttaatagttagaccttgaatcttttaagacccccaag 37247389  T
Q  101 nnnnnnnnnncacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctctcagtaatcctc 187  Q
              ||||||  ||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  37247390 ttttttttcccacaataagggtacctattaggtaccagatcttaaatggtgaagacctcaccattgtggatgctcttagtaatcctc 37247476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 22425224 - 22425289
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  22425224 cacaatgggggtacctattagatatcaggtcttaaatggtgaagacctcactattgtggatgctct 22425289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 53455163 - 53455335
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaat-gggtcttaatagttagaccttgaatcttttaagacccccaa 99  Q
    |||||||||||| ||||||| |||||||||||||  | || ||||| ||| ||||||| ||||||||  ||||| |||||||||||||||| ||||| ||    
T  53455163 tttaatagccataaaaattattattttaataaaaggttatgtgggcccatataagaatggggtctta--agttaaaccttgaatcttttaaaacccctaa 53455260  T
Q  100 gnnnnnnnnnncacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctc 175  Q
    |          ||||||| | | ||||||||| ||||||||||||||| ||||| | |||||||||||||||||||    
T  53455261 g-ttttttttccacaatgagagcacctattaggtaccaggtcttaaatggtgaaaatctcaccattgtggatgctc 53455335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 43968574 - 43968636
Alignment:
Q  114 aatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||| ||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||    
T  43968574 aatgggagtacctattaggtactaggtcttaaataatgaagacctcaccattgtagatgctct 43968636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 2062282 - 2062217
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||||| |||||||||  |||||| |||||||| ||||||||||||||||||| ||| ||||    
T  2062282 cacaatggggatacctattaagtaccagatcttaaatggtgaagacctcaccattgtagatactct 2062217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 3161946 - 3162011
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| |||| |||||| ||| || |||||||| |||||||||||| |||||||||||||||    
T  3161946 cacaatgggagtacatattaggtactagatcttaaatggtgaagacctcaacattgtggatgctct 3162011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 6077762 - 6077818
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgt 167  Q
    ||||||||  ||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  6077762 cacaatggaagtacctattaggtactaggtcttaaatggtgaagacctcaccattgt 6077818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 38298445 - 38298391
Alignment:
Q  122 tacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||||  ||| || |||||||| ||||||||||||||||||||||||||||    
T  38298445 tacctattaagtactagatcttaaatggtgaagacctcaccattgtggatgctct 38298391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 1586373 - 1586312
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||| |||||||| ||| |||| | |||||||| || |||||||||||||||||||||    
T  1586373 cacaatggaggtacctaataggtaccggatcttaaatggttaagacctcaccattgtggatg 1586312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 5834087 - 5834026
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||| |||||||||||| |||| ||||||||||||| || |||  |||||||||||||    
T  5834087 cacaatggaggtacctattaggtaccgggtcttaaatagttaaaaccctaccattgtggatg 5834026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 37978161 - 37978226
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||  ||||||||||| ||| | ||||||||| |||||||| |||||||||| ||||||||    
T  37978161 cacaatggaagtacctattaggtactaagtcttaaatggtgaagacttcaccattgtagatgctct 37978226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 30599666 - 30599603
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgct 174  Q
    ||||||||  ||||||||||||||| || |||||||| ||||||||| ||| |||||| |||||    
T  30599666 cacaatggaagtacctattagatactagatcttaaatggtgaagaccccactattgtgaatgct 30599603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 37247500 - 37247539
Alignment:
Q  211 aatcctcccctcaaataaaatattaattaattagcaatcc 250  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  37247500 aatccttccctcaaataaaatatcaattaattagcaatcc 37247539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 40982725 - 40982674
Alignment:
Q  125 ctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||| ||| ||||||||||| |||||||||||||||| || ||||||||    
T  40982725 ctattaggtactaggtcttaaatggtgaagacctcaccatcgtagatgctct 40982674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 55970044 - 55970002
Alignment:
Q  126 tattagataccaggtcttaaatagtgaagacctcaccattgtg 168  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||    
T  55970044 tattaggtaccaggtcttaaatggtgaagacctcaccaatgtg 55970002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 32212902 - 32212946
Alignment:
Q  112 acaatgggggtacctattagataccaggtcttaaatagtgaagac 156  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||    
T  32212902 acaatgggagtacctattagacaccgggtcttaaatggtgaagac 32212946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 7176779 - 7176952
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaat--gggtcttaatagttagaccttgaatcttttaagaccccca 98  Q
    |||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||  ||||||||  |||||||||||| |||||||||||||||||    
T  7176779 tttaatagccatgaaaattattattttaataaaaagtgatgtgggctcatttaagaatgggggtctta--agttagaccttggatcttttaagaccccca 7176876  T
Q  99 agnnnnnnnnnncacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |           |||||||| |||||||||||| ||||||||||||||| |||||||||||||| | |||||||||||    
T  7176877 a--ttttttttccacaatggaggtacctattagctaccaggtcttaaatggtgaagacctcaccgtagtggatgctct 7176952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 14729001 - 14729176
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaat--gggtcttaatagttagaccttgaatcttttaagaccccca 98  Q
    ||||||||||||||||| || |||||||||||||| |||| ||||| |||||||||||  ||||||||  |||||||| ||| ||||||||||||| |||    
T  14729001 tttaatagccatgaaaaatattattttaataaaaagtgatgtgggcccatttaagaatgggggtctta--agttagacattggatcttttaagacctcca 14729098  T
Q  99 agnnnnnnnnnncacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |           | |||||| ||||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||    
T  14729099 aaaaaaaatttccgcaatggaggtacctattagataccagatcttaaatgatgaagacctcgccattgtggatgctct 14729176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 6107023 - 6106958
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||    
T  6107023 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctct 6106958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 8644327 - 8644262
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||    
T  8644327 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctct 8644262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 44104047 - 44103982
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||| |||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||||||||||    
T  44104047 cacattgggggtacctattaggtaccaagtcttaaatggtgaagacctcaccaatgtggatgctct 44103982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 30905742 - 30905803
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    ||||||||||||||||||||| || ||| ||||||||||| ||||||  |||||| ||||||    
T  30905742 cacaatgggggtacctattaggtatcagctcttaaatagttaagaccctaccattatggatg 30905803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 7206898 - 7206834
Alignment:
Q  112 acaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||| || ||||||||||| ||| |||||||||||||||||||||||  |||||| || |||||    
T  7206898 acaataggagtacctattaggtactaggtcttaaatagtgaagacctcgtcattgtagaggctct 7206834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 176
Target Start/End: Original strand, 31511523 - 31511587
Alignment:
Q  112 acaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||| | ||||||||||| ||| || |||||||| ||||||| ||||||||||| ||||||||    
T  31511523 acaatgagagtacctattaggtactagatcttaaatggtgaagatctcaccattgtagatgctct 31511587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 17793271 - 17793192
Alignment:
Q  16 aattactattttaataaaaaa-tgatatgggctcatttaagaatg-ggtcttaatagttagaccttgaatcttttaagaccc 95  Q
    ||||| ||||||||||||||  |||| || || |||||||||||| |||||||||  |||||||||| ||||||||||||||    
T  17793271 aattattattttaataaaaaggtgatgtgtgcccatttaagaatgaggtcttaat--ttagaccttgcatcttttaagaccc 17793192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 8433848 - 8434008
Alignment:
Q  16 aattactattttaataaaaaatgatatgggctcatttaagaatg---ggtcttaatagttagaccttgaatcttttaagacccccaagnnnnnnnnnnca 112  Q
    ||||| |||||||||||||| |||| || || ||||||||||||   | ||||||  ||||||||||| ||||||||||||||||||           ||    
T  8433848 aattattattttaataaaaagtgatgtgagcccatttaagaatgaaggatcttaa--gttagaccttggatcttttaagacccccaa-tttttttcccca 8433944  T
Q  113 caatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  8433945 caatgggggtacctattaggtaccaggtcttaaatggtgaagacctcaccattgtggatgctct 8434008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 9784796 - 9784861
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||    
T  9784796 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctct 9784861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 15635800 - 15635865
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||    
T  15635800 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctct 15635865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 606611 - 606676
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||    
T  606611 cacaatgggagtatctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctct 606676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 13542414 - 13542479
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| |||||||||||||||||||| |||||||    
T  13542414 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtgaatgctct 13542479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 176
Target Start/End: Original strand, 19495211 - 19495273
Alignment:
Q  114 aatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||    
T  19495211 aatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctct 19495273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 32273820 - 32273885
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||| | ||||| ||||    
T  32273820 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccaatatggatactct 32273885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 33494940 - 33495000
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggat 171  Q
    ||||||||||||||||| ||| || | |||||||||| || ||||||||||||||||||||    
T  33494940 cacaatgggggtacctaataggtatcgggtcttaaatggttaagacctcaccattgtggat 33495000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 14089962 - 14090017
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattg 166  Q
    ||||||||  ||||||||||| ||| ||||||||||| ||||||||||||||||||    
T  14089962 cacaatggaagtacctattaggtactaggtcttaaatggtgaagacctcaccattg 14090017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 2552333 - 2552275
Alignment:
Q  118 ggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||| |||||| || || ||||||||| ||||||||||||||| ||||||||||||    
T  2552333 ggggtacatattaggtatcaagtcttaaatggtgaagacctcaccaatgtggatgctct 2552275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 28837892 - 28837839
Alignment:
Q  121 gtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgct 174  Q
    ||||||||||||||| ||||||||||| |||||||| | || ||||||||||||    
T  28837892 gtacctattagatactaggtcttaaattgtgaagacattactattgtggatgct 28837839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 30471666 - 30471608
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtgg 169  Q
    |||||||| |||||||| ||| |||| | |||||||| || ||||||||||||||||||    
T  30471666 cacaatggaggtacctaataggtaccggatcttaaattgttaagacctcaccattgtgg 30471608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 39324287 - 39324323
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaat 147  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  39324287 cacaatgggggtacctattaggtaccaagtcttaaat 39324323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 5300449 - 5300278
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaat-gggtcttaatagttagaccttgaatcttttaagacccccaa 99  Q
    |||||||||||||||||||| |||||||||||||| |||| || || ||||||||||| ||||||||  |||||||||||| ||||||||||||| ||||    
T  5300449 tttaatagccatgaaaattattattttaataaaaagtgatgtgagcccatttaagaatggggtctta--agttagaccttgtatcttttaagacctccaa 5300352  T
Q  100 gnnnnnnnnnncacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
               |||||| || ||||||||||| ||| |||||||  || ||||||||||||||||||||||||||||    
T  5300351 tttttttttttcacaat-ggagtacctattaggtacaaggtctt--attgtgaagacctcaccattgtggatgctct 5300278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 32827173 - 32827108
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||  |||| |||||||||| ||||||||||| |||||||||||||||| |||||||||||    
T  32827173 cacaatggaagtacatattagatactaggtcttaaatggtgaagacctcaccatggtggatgctct 32827108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 33259647 - 33259708
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    ||||||||||||||||||| | || | |||||||||| ||||||||||||||||||||||||    
T  33259647 cacaatgggggtacctatttggtatcgggtcttaaatggtgaagacctcaccattgtggatg 33259708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 33279806 - 33279867
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    ||||||||||||||||||| | || | |||||||||| ||||||||||||||||||||||||    
T  33279806 cacaatgggggtacctatttggtatcgggtcttaaatggtgaagacctcaccattgtggatg 33279867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 161
Target Start/End: Original strand, 6704357 - 6704407
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcac 161  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  6704357 cacaatggaagtacctattagatatcaggtcttaaatagtgaagacctcac 6704407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Original strand, 7712434 - 7712487
Alignment:
Q  113 caatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattg 166  Q
    |||||| ||||||||||||||||||||| |||||| |||| |||||||||||||    
T  7712434 caatggaggtacctattagataccaggttttaaatggtgatgacctcaccattg 7712487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 19512801 - 19512736
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||| | |||||||||| || ||| |||||||| ||||||||||| ||||||||||||||||    
T  19512801 cacaatggagatacctattaggtatcagatcttaaatggtgaagacctcgccattgtggatgctct 19512736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 42400917 - 42400864
Alignment:
Q  113 caatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattg 166  Q
    ||||||||||||||||||| |||| ||||||||||  |||||||||||||||||    
T  42400917 caatgggggtacctattaggtaccgggtcttaaatgatgaagacctcaccattg 42400864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 6704249 - 6704308
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaatggg 61  Q
    |||||||||||||||||||| |||||||||||||| |||| ||| || |||||||||||||    
T  6704249 tttaatagccatgaaaattattattttaataaaaagtgatgtggcct-atttaagaatggg 6704308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 4447966 - 4447887
Alignment:
Q  16 aattactattttaataaaaaa-tgatatgggctcatttaagaatg-ggtcttaatagttagaccttgaatcttttaagaccc 95  Q
    ||||| ||||||||||||||| |||| ||||| |||||||||||| |||||||||  |||||| ||| ||||||||||||||    
T  4447966 aattattattttaataaaaaagtgatgtgggcccatttaagaatgaggtcttaat--ttagactttgcatcttttaagaccc 4447887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 46592245 - 46592196
Alignment:
Q  122 tacctattagataccaggtcttaaatagtgaagacctcaccattgtggat 171  Q
    ||||||||||||||||  |||||||| ||||| |||||||||||||||||    
T  46592245 tacctattagataccaaatcttaaatggtgaaaacctcaccattgtggat 46592196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 31206542 - 31206594
Alignment:
Q  120 ggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||||||| || |||||||||||| | ||||||||||||| ||||||||    
T  31206542 ggtacctattaggtaacaggtcttaaatggggaagacctcaccaatgtggatg 31206594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38865462 - 38865506
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatggg 45  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||    
T  38865462 tttaatagccatgaaaattattattttaataaaaagtgatgtggg 38865506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 33727105 - 33727168
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgct 174  Q
    ||||||||| ||||||||||| ||| | || |||||| |||||||| ||||||||||| |||||    
T  33727105 cacaatgggagtacctattaggtactatgttttaaatggtgaagacttcaccattgtgaatgct 33727168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 35615769 - 35615727
Alignment:
Q  134 accaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||||| ||| ||||||||||||||||||||| ||||||    
T  35615769 accaggtcttcaatcgtgaagacctcaccattgtgggtgctct 35615727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 19512886 - 19512841
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggc 46  Q
    |||||| ||||||||||||| |||||||||||||| |||| |||||    
T  19512886 tttaatggccatgaaaattattattttaataaaaagtgatgtgggc 19512841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35266051 - 35266108
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaat 58  Q
    ||||||||  || ||||||| |||||||||||||| |||| || ||||||||||||||    
T  35266051 tttaatagttataaaaattattattttaataaaaagtgatgtgagctcatttaagaat 35266108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 31153587 - 31153652
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||    
T  31153587 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtggatgctct 31153652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 47968092 - 47967996
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaat--gggtcttaatagttagaccttgaatcttttaagaccccca 98  Q
    |||||||||||||||||||| |||||||||||||  |||| ||||| |||||||||||  ||||||||  |||||||||||| |||||||||||| ||||    
T  47968092 tttaatagccatgaaaattattattttaataaaatgtgatgtgggcccatttaagaatgggggtctta--agttagaccttg-atcttttaagactccca 47967996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 28963586 - 28963521
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||||||| ||||||||    
T  28963586 cacaatgggagtacctattaggtactaggtcttaaatggtgaagatctcaccattgtagatgctct 28963521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 49615664 - 49615599
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||  ||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||    
T  49615664 cacaatggaagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctct 49615599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 377003 - 376951
Alignment:
Q  120 ggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  377003 ggtacctattagatactaggtcttaaatggtgaagacctcaccattgaggatg 376951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 14476991 - 14477070
Alignment:
Q  16 aattactattttaataaaaa-atgatatgggctcatttaagaatg-ggtcttaatagttagaccttgaatcttttaagaccc 95  Q
    ||||| |||||||||||||| ||||| ||||| |||||||||||| |||||||||  |||||||||| ||||||||||||||    
T  14476991 aattattattttaataaaaagatgatgtgggcccatttaagaatgaggtcttaat--ttagaccttgcatcttttaagaccc 14477070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 42760805 - 42760870
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| | ||||||||||||| || | ||||||  |||||||||||||||||||||||||||    
T  42760805 cacaatgggagcacctattagatactagattttaaatgatgaagacctcaccattgtggatgctct 42760870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 7885866 - 7885807
Alignment:
Q  113 caatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||| |||||||||||| || | |||||||||| |||||||||||||||||| |||||    
T  7885866 caatggaggtacctattaggtatcgggtcttaaatggtgaagacctcaccattggggatg 7885807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 7932567 - 7932622
Alignment:
Q  121 gtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||||| ||| ||||||||||| ||||||||||||| ||||| ||||||||    
T  7932567 gtacctattaggtactaggtcttaaatggtgaagacctcactattgtagatgctct 7932622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 3432813 - 3432752
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    ||||||||  ||||||||||  ||| ||||||||||| ||||||||||||||||||| ||||    
T  3432813 cacaatggaagtacctattatgtactaggtcttaaatggtgaagacctcaccattgtagatg 3432752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 51305769 - 51305704
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| |||| | |||| ||| ||||||||||| |||||||||||| |||||| ||||||||    
T  51305769 cacaatgggagtacttgttaggtactaggtcttaaatggtgaagacctcatcattgtagatgctct 51305704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 182
Target Start/End: Original strand, 38138442 - 38138513
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctctcagtaa 182  Q
    ||||||| |||||||||||||||| | |||||||||| || ||||||  |||| ||| |||||||| |||||    
T  38138442 cacaatgagggtacctattagatatcgggtcttaaatggtaaagaccctaccaatgtcgatgctcttagtaa 38138513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 52120214 - 52120252
Alignment:
Q  120 ggtacctattagataccaggtcttaaatagtgaagacct 158  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  52120214 ggtacctattagatatcaggtcttaaatggtgaagacct 52120252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 53143446 - 53143392
Alignment:
Q  118 ggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||| | ||| ||||| ||||||||| || |||||||||||||||||||||    
T  53143446 ggggtacccaataggtaccatgtcttaaatggttaagacctcaccattgtggatg 53143392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 5552560 - 5552625
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||    
T  5552560 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattgtagatgctct 5552625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 9707477 - 9707542
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||| | ||||||||    
T  9707477 cacaatgggagtacctattaggtactaggtcttaaatggtgaagacctcaccattcttgatgctct 9707542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 449152 - 449324
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaat-gggtcttaatagttagaccttgaatcttttaagacccccaa 99  Q
    |||||||| | | ||||||| |||||||||||||| |||| ||  | ||||||||||| ||||||||  |||||||||||| ||||||||||| ||||||    
T  449152 tttaatagtcgtaaaaattattattttaataaaaagtgatgtgaacccatttaagaatggggtctta--agttagaccttggatcttttaagatccccaa 449249  T
Q  100 gnnnnnnnnnncacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
               || |||| | ||||||||||| ||||||||||||||| |||||||||| ||||  ||| |||||||    
T  449250 --ttgtttttccataatgagagtacctattaggtaccaggtcttaaatggtgaagaccttaccaccgtgtatgctct 449324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 9976844 - 9976894
Alignment:
Q  126 tattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||||    
T  9976844 tattagataccaaatcttaaatggtgaagacctcaccattgtggatgctct 9976894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 12392217 - 12392282
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||| || ||||||||||| ||| ||||||||||| | ||||||||||||||| ||||||||||    
T  12392217 cacaataggagtacctattaggtactaggtcttaaatggggaagacctcaccattatggatgctct 12392282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 44277597 - 44277533
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    ||||||| | ||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||    
T  44277597 cacaatgagagtacctattaggtactaggtcttaaatggtgaaga-ctcaccattgtggatgctct 44277533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 9976725 - 9976802
Alignment:
Q  9 ccatgaaaattactattttaataaaaaatgatatgggctcatttaagaatg-ggtcttaatagttagaccttgaatcttt 87  Q
    |||||||||| | |||||||||||||| |||||||| | |||||||||||| |||||||||  |||||||||| ||||||    
T  9976725 ccatgaaaatcattattttaataaaaagtgatatggacccatttaagaatgaggtcttaat--ttagaccttggatcttt 9976802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 43301868 - 43301804
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctc 175  Q
    |||| |||||||||||||||| ||  |||||||||||  |||||||||||||| |||||||||||    
T  43301868 cacattgggggtacctattaggtataaggtcttaaatgatgaagacctcaccaatgtggatgctc 43301804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 449384 - 449437
Alignment:
Q  123 acctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||||||||||  |||||| | |||||||||||||||  |||||||||||    
T  449384 acctattagataccatatcttaattggtgaagacctcaccaacgtggatgctct 449437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 46209099 - 46209193
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggctcatttaagaatg-ggtcttaatagttagaccttgaatcttttaagacccc 96  Q
    ||||||||| |||||||||| |||||||||||||| |||| |||   |||||||||||| |||||||  | |||||||||| |||||||||||||||    
T  46209099 tttaatagctatgaaaattattattttaataaaaagtgatgtggatccatttaagaatgaggtctta--aattagaccttggatcttttaagacccc 46209193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 47841605 - 47841666
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||||| ||||||||||||||| | ||||||||||| ||||||  |||||||||||||    
T  47841605 cacaatggggctacctattagataccggatcttaaatagttaagaccgtaccattgtggatg 47841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 5355825 - 5355761
Alignment:
Q  112 acaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||  ||||||||||| ||| ||||||||||| ||||||| ||||| ||||||||||||||    
T  5355825 acaatggaagtacctattagttactaggtcttaaatggtgaagatctcacgattgtggatgctct 5355761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 29629270 - 29629205
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||| ||||| |||||| ||| || || ||||||||| |||||||||||||||||||||| |||||    
T  29629270 cacattggggctacctaataggtatcatgtcttaaatggtgaagacctcaccattgtggacgctct 29629205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 30833849 - 30833905
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgt 167  Q
    |||||||||  |||||||||||||| ||||||||||||||||| |||| ||| ||||    
T  30833849 cacaatgggaatacctattagatactaggtcttaaatagtgaaaacctaaccgttgt 30833905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 33987756 - 33987679
Alignment:
Q  16 aattactattttaataaaaaatgatatgggctcatttaagaatg-ggtcttaatagttagaccttgaatcttttaagacc 94  Q
    ||||| |||||||||||||| |||| ||||| ||||||||||||  ||||||||  |||||||||| |||||| ||||||    
T  33987756 aattattattttaataaaaagtgatgtgggcccatttaagaatgatgtcttaat--ttagaccttgcatctttcaagacc 33987679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 38223886 - 38223836
Alignment:
Q  121 gtacctattagataccaggtcttaaatagtgaagacctcaccattgtggat 171  Q
    ||||| ||||| |||||| ||||||||||| |||||| |||||||||||||    
T  38223886 gtaccaattaggtaccagatcttaaatagttaagaccccaccattgtggat 38223836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 42710689 - 42710743
Alignment:
Q  118 ggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||||| ||| ||||||||||||||| || || | ||||||||||||||||    
T  42710689 ggggtacctaataggtaccaggtcttaaatggttaaaatctcaccattgtggatg 42710743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 17604026 - 17604087
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    |||||||| ||||||||||||  |||   |||||||| || |||||||||||||||||||||    
T  17604026 cacaatggaggtacctattaggcaccgaatcttaaatggttaagacctcaccattgtggatg 17604087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 29383747 - 29383906
Alignment:
Q  16 aattactattttaataaaaaa-tgatatgggctcatttaagaatgg-gtcttaatagttagaccttgaatcttttaagacccccaagnnnnnnnnnncac 113  Q
    ||||| ||||||||||||||  |||||||||| ||||||||||||  ||||||||  |||||||||| |||||||||||||| |||           |||    
T  29383747 aattattattttaataaaaaggtgatatgggcccatttaagaatgatgtcttaat--ttagaccttgcatcttttaagaccctcaa-atttttttcccac 29383843  T
Q  114 aatgggggtacctattagataccaggtcttaaatagtgaagac-ctcaccattgtggatgctct 176  Q
    |||||||||||||||||| ||||| |||||||||  | ||||| ||| ||||||||||||||||    
T  29383844 aatgggggtacctattaggtaccacgtcttaaatgtttaagactctc-ccattgtggatgctct 29383906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 11703365 - 11703426
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    ||||||||||||||||| ||| |||| ||||||| || || |||||||||||||||||||||    
T  11703365 cacaatgggggtacctaataggtaccgggtcttacatggttaagacctcaccattgtggatg 11703426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 6794113 - 6794178
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||||| |||||||||| |||||||||||||||  | ||||||   ||||||||||||||||    
T  6794113 cacaatggggatacctattaggtaccaggtcttaaatgtttaagaccctcccattgtggatgctct 6794178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 32025877 - 32025922
Alignment:
Q  113 caatgggggtacctattagataccaggtcttaaatagtgaagacct 158  Q
    ||||||| ||||||||||| ||| ||||||||||| ||||||||||    
T  32025877 caatgggagtacctattaggtactaggtcttaaatggtgaagacct 32025922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 10137 - 10202
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||||| | |||||||||| || ||| |||||||| ||||||||||| ||||||||||||||||    
T  10137 cacaatggagatacctattaggtatcagatcttaaatggtgaagacctcgccattgtggatgctct 10202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 10052 - 10097
Alignment:
Q  1 tttaatagccatgaaaattactattttaataaaaaatgatatgggc 46  Q
    |||||| ||||||||||||| |||||||||||||| |||| |||||    
T  10052 tttaatggccatgaaaattattattttaataaaaagtgatgtgggc 10097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 2320 - 2192
Alignment:
Q  16 aattactattttaataaaaaa-tgatatgggctcatttaagaatg-ggtcttaatagttagaccttgaatcttttaagacccccaagnnnnnnnnnncac 113  Q
    ||||| ||||||||||||||  |||| ||||| |||||||||||| |||||||||  |||||| ||| |||||||||||||| |||           |||    
T  2320 aattattattttaataaaaaggtgatgtgggcccatttaagaatgaggtcttaat--ttagactttgcatcttttaagaccctcaa---tttttttccac 2226  T
Q  114 aatgggggtacctattagataccaggtcttaaat 147  Q
    |||||||||||||||||  |||||||||||||||    
T  2225 aatgggggtacctattatgtaccaggtcttaaat 2192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 26864 - 26799
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatgctct 176  Q
    |||||| || |||||||||| |||  || ||||||||  |||||||||||||||||| ||||||||    
T  26864 cacaataggagtacctattaaatattagatcttaaatgatgaagacctcaccattgtagatgctct 26799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 190 - 129
Alignment:
Q  111 cacaatgggggtacctattagataccaggtcttaaatagtgaagacctcaccattgtggatg 172  Q
    ||||||||||||||||| |||  | ||||| |||||| || ||||||| |||||||||||||    
T  190 cacaatgggggtacctaataggcatcaggtattaaatggttaagacctaaccattgtggatg 129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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