View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2703_low_56 (Length: 250)

Name: NF2703_low_56
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2703_low_56
NF2703_low_56
[»] chr7 (15 HSPs)
chr7 (1-239)||(4784037-4784275)
chr7 (1-239)||(4816466-4816704)
chr7 (1-151)||(4863662-4863815)
chr7 (4-126)||(4636631-4636753)
chr7 (1-129)||(4630692-4630820)
chr7 (75-149)||(4697466-4697543)
chr7 (75-127)||(4672443-4672495)
chr7 (74-130)||(4712350-4712406)
chr7 (1-52)||(4846217-4846268)
chr7 (1-46)||(4697392-4697437)
chr7 (86-126)||(4643454-4643494)
chr7 (86-129)||(4846299-4846342)
chr7 (7-49)||(4647378-4647420)
chr7 (89-126)||(4666703-4666740)
chr7 (4-56)||(4661636-4661688)
[»] chr4 (1 HSPs)
chr4 (78-126)||(18926021-18926069)


Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4784037 - 4784275
Alignment:
Q  1 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||    
T  4784037 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaacctatgcctacggtatatcgtgatgtcacgttgaatggaattgag 4784136  T
Q  101 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4784137 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 4784236  T
Q  201 aatcaacnnnnnnnntccttgctgtggttgctgtttcat 239  Q
    |||||||        ||||||||||||||||||||||||    
T  4784237 aatcaacaacaaaaatccttgctgtggttgctgtttcat 4784275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 4816466 - 4816704
Alignment:
Q  1 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgag 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||| |||||||||||||||||||||||||| |||    
T  4816466 aagctctcaaattgaaaaagttaatctttcgatcaagctacatcgattaccaaaacctatgccttcggtatatcgtgatgtcacgttgaatggaattgag 4816565  T
Q  101 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4816566 attttgaaaataagtgataaaaataatctctttggagtgaatccaaaacccatgtctttttctcccaaggaacaggttttaccaactcaacaatggaaga 4816665  T
Q  201 aatcaacnnnnnnnntccttgctgtggttgctgtttcat 239  Q
    |||||||        ||||||||||||||||||||||||    
T  4816666 aatcaacaacaaaaatccttgctgtggttgctgtttcat 4816704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 4863815 - 4863662
Alignment:
Q  1 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgag 100  Q
    ||||||||||||||||| |||||| |||||| ||||| |||||| |||||||||  | |||  |||    || |||||||| ||||||||||||||||||    
T  4863815 aagctctcaaattgaaagagttaacctttcgctcaagttacaacaattaccaaagaccatgtttacaaaataccgtgatgttacgttgaatggaatcgag 4863716  T
Q  101 attttgaaaataagtgataaaaa---taatctctttggagtgaatccaaaaccc 151  Q
    ||||| |||||||| ||||||||   |||| |||||||| ||||||||||||||    
T  4863715 atttttaaaataagcgataaaaataataatttctttggactgaatccaaaaccc 4863662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 126
Target Start/End: Complemental strand, 4636753 - 4636631
Alignment:
Q  4 ctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgagatt 103  Q
    |||||||||||||| |||| ||||||| |||||||| |||||||||||| || | |||||||| || ||||||||||| |   | |||||||||||||||    
T  4636753 ctctcaaattgaaagagtttatctttcaatcaagcttcaacgattaccacaacccatgcctacagtatatcgtgatgttattcttaatggaatcgagatt 4636654  T
Q  104 ttgaaaataagtgataaaaataa 126  Q
    || ||||| ||||||||| ||||    
T  4636653 ttcaaaattagtgataaatataa 4636631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 4630820 - 4630692
Alignment:
Q  1 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaatctatgcctacggtgtatcgtgatgtcacgttgaatggaatcgag 100  Q
    ||||||||||||||||| |||||||||||| |||||||| | ||||  |||| || |||| |  ||  | ||||||||||||  | |||||||||| |||    
T  4630820 aagctctcaaattgaaagagttaatctttcaatcaagcttcgacgagcaccagaaactatacacacaatatatcgtgatgtcctgctgaatggaattgag 4630721  T
Q  101 attttgaaaataagtgataaaaataatct 129  Q
    ||||| |||||||||||||||| ||||||    
T  4630720 attttcaaaataagtgataaaactaatct 4630692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 4697466 - 4697543
Alignment:
Q  75 gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaa---ataatctctttggagtgaatccaaaac 149  Q
    |||||||||| |||||||| ||||||||||||||||||| ||||||||   ||||||||||||||   ||||||||||    
T  4697466 gtgatgtcacattgaatggcatcgagattttgaaaataaatgataaaaatgataatctctttggatcaaatccaaaac 4697543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 4672495 - 4672443
Alignment:
Q  75 gtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataat 127  Q
    |||||||||| || ||||||||||||||||| ||| |||||||||||||||||    
T  4672495 gtgatgtcacattaaatggaatcgagattttcaaagtaagtgataaaaataat 4672443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 4712350 - 4712406
Alignment:
Q  74 cgtgatgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataatctc 130  Q
    ||||||||||   |||||||||| |||||||| ||||||||||||||||||||||||    
T  4712350 cgtgatgtcataatgaatggaattgagattttcaaaataagtgataaaaataatctc 4712406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4846217 - 4846268
Alignment:
Q  1 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacgattacca 52  Q
    ||||||| ||||||||| |||||||||||| |||||||| ||||||||||||    
T  4846217 aagctctgaaattgaaagagttaatctttcaatcaagcttcaacgattacca 4846268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 4697392 - 4697437
Alignment:
Q  1 aagctctcaaattgaaaaagttaatctttcgatcaagctacaacga 46  Q
    ||||||||||||||||| | |||||||||| |||||||||||||||    
T  4697392 aagctctcaaattgaaagacttaatctttcaatcaagctacaacga 4697437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 4643494 - 4643454
Alignment:
Q  86 ttgaatggaatcgagattttgaaaataagtgataaaaataa 126  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  4643494 ttgaatggaatcgagattttaaaaataagtgacaaaaataa 4643454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 4846299 - 4846342
Alignment:
Q  86 ttgaatggaatcgagattttgaaaataagtgataaaaataatct 129  Q
    |||||||||||||||||||| ||| ||||||||||||| |||||    
T  4846299 ttgaatggaatcgagattttcaaagtaagtgataaaaacaatct 4846342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Complemental strand, 4647420 - 4647378
Alignment:
Q  7 tcaaattgaaaaagttaatctttcgatcaagctacaacgatta 49  Q
    ||||||||||| |||||||||||| |||||||| |||||||||    
T  4647420 tcaaattgaaagagttaatctttcaatcaagcttcaacgatta 4647378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 4666740 - 4666703
Alignment:
Q  89 aatggaatcgagattttgaaaataagtgataaaaataa 126  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  4666740 aatggaatcgagattttaaaaataagtgacaaaaataa 4666703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 4661688 - 4661636
Alignment:
Q  4 ctctcaaattgaaaaagttaatctttcgatcaagctacaacgattaccaaaat 56  Q
    |||||||||||||| |||| ||||||| |||||||| |||| |||| ||||||    
T  4661688 ctctcaaattgaaagagttgatctttcaatcaagcttcaaccattatcaaaat 4661636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 18926021 - 18926069
Alignment:
Q  78 atgtcacgttgaatggaatcgagattttgaaaataagtgataaaaataa 126  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||||||    
T  18926021 atgtcacattgaatgggatcgagattttgaaaataagtgacaaaaataa 18926069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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