View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_58 (Length: 248)
Name: NF2703_low_58
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 23829305 - 23829075
Alignment:
| Q |
1 |
cacttttagcagtctgattacctttatcaacaaatcagtttatactagtcactaatcaaaatgatacaattgattcttgagcaagttaatgaactcaaca |
100 |
Q |
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| T |
23829305 |
cacttttagcagtgtgattacctttatcaacaaatcagtttatactagtcactaatcaaaatgatacaattgatccttgagcaagttaatgaactcaaca |
23829206 |
T |
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| Q |
101 |
gacaaaagatactaaaaaagttgattaaacaacagaaattcatatacagaaagacataaaatctgtctagtagttattataccggaggcgaggtattctg |
200 |
Q |
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| T |
23829205 |
gacaaaagatactaaaaaagttgattaaacaacggaaattcatatacagaaagacataaaatctgtctagtagttattataccggaggcgaggtattctg |
23829106 |
T |
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| Q |
201 |
gagctgcatatccgtatgttagcttggtgga |
231 |
Q |
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| T |
23829105 |
gagctgcatatccgtatgttagcttggtgga |
23829075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 23820138 - 23820014
Alignment:
| Q |
1 |
cacttttagcagtctgattacctttatcaacaaatcagtttatactagtcactaatcaaaatgat-----acaattgattcttgagcaagttaatgaact |
95 |
Q |
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| T |
23820138 |
cacttttagcagtgtgattaccttcattaacaaatcattttgtattactcactaacccaaatgatgtttagtagttgattattgattaagttaatgaact |
23820039 |
T |
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| Q |
96 |
caacagacaaaagatactaaaaaag |
120 |
Q |
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| T |
23820038 |
caacagacgaaacatactagaaaag |
23820014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 23819870 - 23819820
Alignment:
| Q |
180 |
taccggaggcgaggtattctggagctgcatatccgtatgttagcttggtgg |
230 |
Q |
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| T |
23819870 |
taccggtggctaagtattctggagccgcatatccgtaggttagcttggtgg |
23819820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 23825188 - 23825152
Alignment:
| Q |
180 |
taccggaggcgaggtattctggagctgcatatccgta |
216 |
Q |
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|||||| ||| |||||||||||||||||||||||||| |
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| T |
23825188 |
taccggtggccaggtattctggagctgcatatccgta |
23825152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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