View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_6 (Length: 638)
Name: NF2703_low_6
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 9 - 622
Target Start/End: Original strand, 9665357 - 9665976
Alignment:
| Q |
9 |
gaacaatatctatgaagggtgccacaatacaa------caacaacaaaatttaattacacttttggtccttctaatttaaaaaatttccaaaaataatcc |
102 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
9665357 |
gaacaatatctgtgaagtgtgccacaatacaacaacaacaacaacaaaatttaattacacttttggtcattctaatttaaaaaatttccaaaaataattc |
9665456 |
T |
|
| Q |
103 |
tcccttttaaagttgaatattttgttccctcagtttcacatttgttgcaattttgatcataacctatattttttgccccattaacgatgatttttggcct |
202 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
9665457 |
tcccttttaaagttgaacattttgttccctcaatttcacatttgttgcaattttgatcataacctatattttttgctccattaatgatgatttttggcct |
9665556 |
T |
|
| Q |
203 |
cacaaaatctgaattattctcccaaaagtgatagtttttatcttgagatttaacatttggccaaatatcatctattccggagaagaaaatgtagattggg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
9665557 |
cacaaaatctgaattattctcccaaaagtggtagattttatcttgagatttaacatttggccaagaatcatctattacggagaagaaaatgtagattggg |
9665656 |
T |
|
| Q |
303 |
actagaattacatcaaatatgaaaattgagtgaccaagaattctgatttttaaaaaatggaata-ttttgtgaatcatataaaataggagacaaaaagtt |
401 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
9665657 |
actagaattacaacaaatatgaaaattgagtgaccaagaattctga-ttttaaaaaatggaatatttttgtgaattagataaaataggagacaaaaagtt |
9665755 |
T |
|
| Q |
402 |
caatcaagcctaaaatataatccttacagaatgttatgaagtcttaatatttccattgtttaccaaacagatgaattcaacaaacttgctaaaacctatt |
501 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9665756 |
caatcaagcctaaaatataatccttacataatgttatgaagtcttaatatttccattgtttaccaaacagaagaattcaacaaacttgctaaaacctatt |
9665855 |
T |
|
| Q |
502 |
ttataattattgtggaaataattaggaatagatattgtggcttaacgtataagacatatttgttgtaggtttttaaattttttacataccaacaatagtt |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9665856 |
ttataattattgtggaaataattaggaatagatattgtggtttaacgtataagacatatttgatgtaggtttttaaattttttacatatcaacaatagtt |
9665955 |
T |
|
| Q |
602 |
catatggaaggatctggttat |
622 |
Q |
| |
|
||||| ||||||||||||||| |
|
|
| T |
9665956 |
catatagaaggatctggttat |
9665976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 441
Target Start/End: Original strand, 9863361 - 9863797
Alignment:
| Q |
10 |
aacaatatctatgaagggtgccacaataca----acaacaacaaaatttaattacacttttggtccttctaatttaaaaaatttccaaaaataatcctcc |
105 |
Q |
| |
|
|||||||||| | ||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9863361 |
aacaatatctgtaaagggtgccacaatatatataacaacaacaaaaattaattacatttttggtccttctaatttaaaaaatttccaaaaataatcctcc |
9863460 |
T |
|
| Q |
106 |
cttttaaagttgaatattttgttccctcagtttcacatttgttgcaattttgatcataacctatattttttgccccattaacgatgatttttggcctcac |
205 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9863461 |
cttttaaagttgaacattttgttccctcagtttcacat-------------------aacctatattttttgccccattaatgatgatttttggcctcac |
9863541 |
T |
|
| Q |
206 |
aaaatctgaattattctcccaaaagtgatagtttttatcttgagatttaacatttgg----------------------ccaaatatcatctattccgga |
283 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| || |
|
|
| T |
9863542 |
aa--tctgaattattctcccaaaagtgatagtttttatcttgagatttaacatttgggcaataaattaccacttctaggccaaaaatcatctattccaga |
9863639 |
T |
|
| Q |
284 |
gaagaaaatgtagattgggactagaattacatcaaatatgaaaattgagtgaccaagaattctgatttttaaaaaatggaata-ttttgtgaatcatata |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||| |||||||||||| |||| ||||||||||| ||| |
|
|
| T |
9863640 |
gaagaaaatgtagattgggactagaattacaacaaatatgaaaattgaaggaccaagaattttga-ttttaaaaaatgaaatatttttgtgaatcggata |
9863738 |
T |
|
| Q |
383 |
aaataggagacaaaaagttcaatcaagcctaaaatataatccttacagaatgttatgaa |
441 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
9863739 |
aaataggagacaaaaatttcaatcaagactaaaatataatccttacaggatgttatgaa |
9863797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 380 - 465
Target Start/End: Original strand, 9664962 - 9665047
Alignment:
| Q |
380 |
ataaaataggagacaaaaagttcaatcaagcctaaaatataatccttacagaatgttatgaagtcttaatatttccattgtttacc |
465 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| |||||||||||| |
|
|
| T |
9664962 |
ataaaataggagactaaaagttcaatcaagcctaaaatataatttttaaaggatgttatgaagtcttaatattgccattgtttacc |
9665047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University