View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_60 (Length: 247)
Name: NF2703_low_60
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_60 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 30859823 - 30859613
Alignment:
| Q |
13 |
aatattactattgaggaacggagggggtggtaaatgtaatgacacttcaacggtcaagtcggtatggttaatagcatgtttggttagcggcaacaaggaa |
112 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30859823 |
aatattactacagaggaactgagggggtggtacatgtaatggcacttcaacggtcaagtcggtatgattaatagcatgtttggttagcggcaacaaggaa |
30859724 |
T |
|
| Q |
113 |
aatattgtgtccctggatacatttgttgtgatttttgagaagctgctaattgtagattttgtccaaacatatgtccagagtaattgtaccgctaaaacaa |
212 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
30859723 |
aatattgtgtccctatgtacatttgttgtggtttttgagaagttgctaattgtagattttgtccaaacgtatgtccacagtaattgtatcgctaaaacaa |
30859624 |
T |
|
| Q |
213 |
acataggctag |
223 |
Q |
| |
|
||||||||||| |
|
|
| T |
30859623 |
acataggctag |
30859613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 7094472 - 7094597
Alignment:
| Q |
96 |
ttagcggcaacaaggaaaatattgtgtccctggatacatttgttgtgatttttgagaagctgctaattgtagattttgtccaaacatatgtccagagtaa |
195 |
Q |
| |
|
||||| |||||||| |||||| ||||| || ||||||||| || |||||||||||||||| |||||||| ||||||||||| ||| | | || |
|
|
| T |
7094472 |
ttagcagcaacaagtgaaatatcgtgtctctatgtacatttgtcgttgtttttgagaagctgctgattgtagagtttgtccaaacgcgcgtctactgcaa |
7094571 |
T |
|
| Q |
196 |
ttgtaccgctaaaacaaacataggct |
221 |
Q |
| |
|
||||||||| ||||||||||| |||| |
|
|
| T |
7094572 |
ttgtaccgccaaaacaaacattggct |
7094597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 32319774 - 32319802
Alignment:
| Q |
194 |
aattgtaccgctaaaacaaacataggcta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
32319774 |
aattgtaccgctaaaacaaacataggcta |
32319802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University