View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2703_low_61 (Length: 247)

Name: NF2703_low_61
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2703_low_61
NF2703_low_61
[»] chr5 (4 HSPs)
chr5 (11-247)||(16464927-16465163)
chr5 (11-238)||(16471885-16472119)
chr5 (22-108)||(1683921-1684007)
chr5 (47-104)||(24179604-24179661)
[»] chr2 (1 HSPs)
chr2 (52-174)||(12261627-12261747)
[»] chr7 (1 HSPs)
chr7 (11-119)||(37205062-37205170)
[»] chr1 (2 HSPs)
chr1 (13-115)||(10253992-10254090)
chr1 (76-169)||(26586267-26586357)
[»] chr4 (2 HSPs)
chr4 (54-174)||(7848003-7848121)
chr4 (75-166)||(52418101-52418192)
[»] chr3 (3 HSPs)
chr3 (41-107)||(5050157-5050223)
chr3 (40-106)||(25052714-25052780)
chr3 (14-119)||(36455501-36455600)
[»] scaffold0007 (1 HSPs)
scaffold0007 (75-119)||(190396-190440)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 247
Target Start/End: Complemental strand, 16465163 - 16464927
Alignment:
Q  11 gaaggaagaagaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  16465163 gaaggaagaagaaaatgtcgtcagcgaaggtgagtatgacctgaattcttgtatctttggtgaaagtgagagatttgtttctaaattgagagtgagatcg 16465064  T
Q  111 aaaaagaaattaaaaggattataagtttgtttcctttcaaattttgtttagtttgagctcttttcagaaacaaattgttttttcaataaaacttagactc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16465063 aaaaagaaattaaaaggattataagtttgtttcctttcaaattttgtttagtttgagctcttttcagaaacaaattgttttttcaataaaacttagactc 16464964  T
Q  211 ataaactcatcatagactcgcgagtctacacgagtat 247  Q
    |||||||||||||||||||||||||||||||||||||    
T  16464963 ataaactcatcatagactcgcgagtctacacgagtat 16464927  T

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Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 16472119 - 16471885
Alignment:
Q  11 gaaggaagaagaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatag 110  Q
    |||| ||||| ||| |||||||| || ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  |    
T  16472119 gaagaaagaaaaaattgtcgtcaacgtaggtgagtatgacctgaattcttctatttttggtgagagtgagagatttgtttctaaattgagagtgagaccg 16472020  T
Q  111 aaaaagaaattaaaaggatt----ataagtttgtttcctttcaaattttgtttagtttgagc-tcttttcagaaacaaattgttttttcaataaaact-- 203  Q
    ||||||||||||| ||||||     ||||||| |||||||| || ||||||||||||||||| | |||||| ||||||||||||||||||| ||||||      
T  16472019 aaaaagaaattaagaggattctaagtaagtttttttcctttaaatttttgtttagtttgagctttttttcaaaaacaaattgttttttcaaaaaaactca 16471920  T
Q  204 tagactcataaactcatcatagactcgcgagtcta 238  Q
    ||||||  ||||||||||||| |||| ||||||||    
T  16471919 tagacttgtaaactcatcataaactcacgagtcta 16471885  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 1684007 - 1683921
Alignment:
Q  22 aaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagat 108  Q
    ||||||||||  | |||||||| || ||||||||||||||||| |||||||| | || ||| | |||||||||| ||||||||||||    
T  1684007 aaaatgtcgttggtgaaggtgaatacgacctgaattcttctatatttggtgagaatgtgagttatgtttctaaactgagagtgagat 1683921  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 24179604 - 24179661
Alignment:
Q  47 tgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtg 104  Q
    |||||| ||||||||||||||||||||  ||||||| |||||||||||||||| ||||    
T  24179604 tgaccttaattcttctatctttggtgagggtgagagttttgtttctaaattgaaagtg 24179661  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 174
Target Start/End: Original strand, 12261627 - 12261747
Alignment:
Q  52 tgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattata-agtttgtttcctttcaa 150  Q
    ||||||||||||||||  |||| |||||||| |||||||||||||||||||||| || |||||||||   ||||||||| || | ||| |||||||||||    
T  12261627 tgaattcttctatcttgagtgagagtgagagttttgtttctaaattgagagtgaaatcgaaaaagaa---aaaaggattctagattttatttcctttcaa 12261723  T
Q  151 attttgtttagtttgagctctttt 174  Q
    |||||||||| |||||||| ||||    
T  12261724 attttgtttaatttgagctttttt 12261747  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 37205170 - 37205062
Alignment:
Q  11 gaaggaagaagaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatag 110  Q
    |||||||| |||||||||||||   ||| |||||  |||| |||||||||| ||||||||||| |||||||| |||||||| |||||||||||||| |||    
T  37205170 gaaggaaggagaaaatgtcgtcgaagaatgtgagcgtgacttgaattcttccatctttggtgagagtgagagttttgtttcaaaattgagagtgaggtag 37205071  T
Q  111 aaaaagaaa 119  Q
    |||||||||    
T  37205070 aaaaagaaa 37205062  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 10253992 - 10254090
Alignment:
Q  13 aggaagaagaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaa 112  Q
    ||||||||||||||||||||  ||||||||    |||||| |||||||||||||||||| |||||||||| ||||||| | |  |||||||||||| |||    
T  10253992 aggaagaagaaaatgtcgtcgacgaaggtg----tgacctaaattcttctatctttggtcaaagtgagagttttgtttattagatgagagtgagatcgaa 10254087  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 26586357 - 26586267
Alignment:
Q  76 gtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattataagtttgttt-cctttcaaattttgtttagtttgagct 169  Q
    ||||||| ||||||||||||||||||||||||   ||||||| |    ||||| | || |||| ||| |||||||||||||||||||||||||||    
T  26586357 gtgagagttttgtttctaaattgagagtgagagcaaaaaagata----aaggactctaggttttttttcctttcaaattttgtttagtttgagct 26586267  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 7848121 - 7848003
Alignment:
Q  54 aattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattataag-tttgtttcctttcaaat 152  Q
    ||||||||||||||| |||| |||||||  ||||||||||||| ||||||||||| |||||| ||   || |||||| || | ||| |||||||||| ||    
T  7848121 aattcttctatctttcgtgagagtgagaattttgtttctaaatggagagtgagatcgaaaaataa---aagaggattttaggttttttttcctttcatat 7848025  T
Q  153 tttgtttagtttgagctctttt 174  Q
    ||||||||||| ||||| ||||    
T  7848024 tttgtttagttggagctttttt 7848003  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 52418101 - 52418192
Alignment:
Q  75 agtgagagatttgtttctaaattgagagtgagatagaaaaagaaattaaaaggattataagtttgtt---tcctttcaaattttgtttagtttga 166  Q
    |||||||| ||||||| ||||||||||||||||| |||||||||   || |||||| ||||||| ||   |||||||||||||||||||||||||    
T  52418101 agtgagagttttgtttttaaattgagagtgagatcgaaaaagaa---aagaggattctaagttttttttctcctttcaaattttgtttagtttga 52418192  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 5050223 - 5050157
Alignment:
Q  41 tgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgaga 107  Q
    ||||| |||||| ||||||||||||||| |||| |||||||| | | ||| ||||||||||||||||    
T  5050223 tgagtgtgaccttaattcttctatctttagtgagagtgagagttgtttttttaaattgagagtgaga 5050157  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 25052714 - 25052780
Alignment:
Q  40 gtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgag 106  Q
    ||||| || ||||||||||||||||||||| ||| |||| |||  | ||||||||||||||||||||    
T  25052714 gtgagcataacctgaattcttctatctttgatgagagtgggaggatcgtttctaaattgagagtgag 25052780  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 36455501 - 36455600
Alignment:
Q  14 ggaagaagaaaatgtcgtcagcgaaggtgagtatgacctgaattcttctatctttggtgaaagtgagagatttgtttctaaattgagagtgagatagaaa 113  Q
    |||||||||||||||| |   ||||||||| | |||| ||||||||||||||||       |  ||||| ||| ||||||||||||||||||||| ||||    
T  36455501 ggaagaagaaaatgtcattgacgaaggtgaatgtgacttgaattcttctatcttc------atagagagttttatttctaaattgagagtgagatcgaaa 36455594  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 190396 - 190440
Alignment:
Q  75 agtgagagatttgtttctaaattgagagtgagatagaaaaagaaa 119  Q
    ||||| || |||||||||||||||||| |||||| ||||||||||    
T  190396 agtgaaagttttgtttctaaattgagaatgagatcgaaaaagaaa 190440  T

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