View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_66 (Length: 237)
Name: NF2703_low_66
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_66 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16464599 - 16464377
Alignment:
| Q |
1 |
cgatcagatcggcaacgacaggacaagtacaagtggatagaaaagcttttggttggttgagggggagatggaaaactgaatgttgaacacttttaagtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16464599 |
cgatcagatcggcaacgacaggacaagtacaagtggatagaaaagcttttggttggttgagggggagatggaaaactgaatgttgaacacttttaagtgt |
16464500 |
T |
|
| Q |
101 |
ggtgtcaacctctcattcagctaactgtctatcattttggcaacttagaattttttatgattggtttattccgttgtgaaatttgagatctttacatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16464499 |
ggtgtcaacctctcattcagctaactgtctatcattttggcaacttagaattgtttatgattggtttattccgttgtgaaatttgagatctttacatgtg |
16464400 |
T |
|
| Q |
201 |
ctgtatttttcttgatgtttgtg |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
16464399 |
ctgtatttttcttgatgtttgtg |
16464377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 16471529 - 16471399
Alignment:
| Q |
96 |
agtgcggtgtcaacctctcattcagctaactgtct--atcattttggcaacttagaatt-ttttatgattggtttattccgttgtgaaatttgagatctt |
192 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
16471529 |
agtgtggtgtcaacctctcattcagctaactgtctttatcattttggcaacttagaattgttttatgattggtttgttccgttgtgaaatttgagatctt |
16471430 |
T |
|
| Q |
193 |
tacatgtgctgtatttttcttgatgtttgtg |
223 |
Q |
| |
|
|||||||| |||||| | ||||||||||||| |
|
|
| T |
16471429 |
tacatgtgttgtattatgcttgatgtttgtg |
16471399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 16471642 - 16471554
Alignment:
| Q |
4 |
tcagatcggcaacgacaggacaagtacaagtggatagaaaagcttttggttggttgagggggagatggaaaactgaatgttgaacacttt |
93 |
Q |
| |
|
||||||||||||| | | |||||||||| |||||||||| ||| |||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16471642 |
tcagatcggcaacaaaggtacaagtacaacgggatagaaaa-cttctggttgattgagggggagatagaaaactgaatgttgaacacttt |
16471554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 44950366 - 44950317
Alignment:
| Q |
174 |
ttgtgaaatttgagatctttacatgtgctgtatttttcttgatgtttgtg |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44950366 |
ttgtaaaatttgagatctttacatgtgctgtatttttcttaatgtttgtg |
44950317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University