View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_67 (Length: 236)
Name: NF2703_low_67
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 20 - 220
Target Start/End: Complemental strand, 38822702 - 38822502
Alignment:
| Q |
20 |
cctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcc |
119 |
Q |
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| T |
38822702 |
cctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcc |
38822603 |
T |
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| Q |
120 |
tctatacttaatttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgttaacataataacttagcctt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38822602 |
tctatacttaatttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgttaacataataacttagcctt |
38822503 |
T |
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| Q |
220 |
t |
220 |
Q |
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| |
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| T |
38822502 |
t |
38822502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 38809753 - 38809626
Alignment:
| Q |
20 |
cctcagcagtgttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatctctgcagcaaattttccccatggccttatcctcactcc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| |
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| T |
38809753 |
cctcagcagtgttaaatgtaccaagccaaactcgagctccatgtctagccgaatctcgaatctctgctgcacattttccccatggccttatccttactcc |
38809654 |
T |
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| Q |
120 |
tctatacttaatttgctttggtaattca |
147 |
Q |
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| T |
38809653 |
tctatactttattttctttggtaattca |
38809626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 201
Target Start/End: Complemental strand, 38811810 - 38811639
Alignment:
| Q |
31 |
ttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctcgaatc-tctgcagcaaattttccccatggccttatcctcactcctctatactta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||||| |||||||| ||||| ||||||||||||| |
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| T |
38811810 |
ttaaatgtaccaagccaaactcgagcaccatgcctagccgaatctctaatcttaggggggaaattttggccatggccggatcctttctcctctatacttg |
38811711 |
T |
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| Q |
130 |
atttgctttggtaattcacattcactcacctttttctttctttcattttccattgtgtgtacaagaatgtta |
201 |
Q |
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| T |
38811710 |
atttgcattgttaattcctcttcattcacctttccctctacgtcgttttccattgtgtgtacaagaatgtta |
38811639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 1008600 - 1008553
Alignment:
| Q |
79 |
atctctgcagcaaattttccccatggccttatcctcactcctctatac |
126 |
Q |
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| T |
1008600 |
atctctgcagcaaatttcccccatggccttcgcctcacacctctatac |
1008553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 40444680 - 40444726
Alignment:
| Q |
76 |
cgaatctctgcagcaaattttccccatggccttatcctcactcctct |
122 |
Q |
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||||| ||||||||| ||||||||||||||||| |||| |||||||| |
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| T |
40444680 |
cgaatttctgcagcatattttccccatggccttctccttactcctct |
40444726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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