View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_7 (Length: 617)
Name: NF2703_low_7
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Original strand, 38706210 - 38706796
Alignment:
| Q |
8 |
ccaagaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttagttccatcttaatcctaaagtagtaatattaattaaatttactcaaac |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38706210 |
ccaaaaatataaacaaaagagtcaaccagtcaaaccccaaactataagcttggttccatcttaatcctaaagtagtaatattaattaaatttactcaaac |
38706309 |
T |
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| Q |
108 |
tggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgaagtatacctattcttatccga |
207 |
Q |
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| T |
38706310 |
tggtgcattattcgtgtaccaagtcgtcactattccgtacccttttaatttatattttgtagactagtgcaaaccttgaagtatacctatccttatccga |
38706409 |
T |
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| Q |
208 |
ctctattatnnnnnnnnnnnncacaataactccacatgcccccaataagtgaaaccatcaattaacaatcaaaatcttacacgtttcttcgtttctcata |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38706410 |
ctctattattatatata----cacaataactccacatgcccccaataagtgaaaccatcaattaa--atcaaaatcttacacgtttcttcgtttctcata |
38706503 |
T |
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| Q |
308 |
tatatttcatactgtttgttcttcctttcacaaaactaaatcacnnnnnnn-------------attgagagctacacatacatgagaggtatggatatt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38706504 |
tatatttcatactgtttgttcttcctttcacaaaactaaatcacttttaatttcagtaacaattattgagagctacacatacatgagaggtatggatatt |
38706603 |
T |
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| Q |
395 |
aaggttcagaaaggtgggtctgcaaaggaaaatgagacaggggtaagaaagggtccttggacgttagaagaggacaccattctggttgattacattacaa |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38706604 |
aaggttcagaaaggtgggtctgcaaaggaaaatgagacaggggtaagaaaaggtccttggacgttagaagaggacaccattctggttgattacattacaa |
38706703 |
T |
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| Q |
495 |
tacacggtgaaggtcactggaatacccttgcatcttctgcaggcatgtatatatttatatattttcttctagctcttttatttattagcttat |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38706704 |
tacacggtgaaggtcactggaatacccttgcatcttctgcaggcatgtatatatttatatattttcttctagctcttttatttattagcttat |
38706796 |
T |
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