View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_71 (Length: 229)
Name: NF2703_low_71
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 53184690 - 53184876
Alignment:
| Q |
12 |
aagcaaagggaggtggtttattaaaatgtgtctaagaagattggaaataagtgtaccactgtgtttggtatgaaccttcgttggagggggttctgaaggg |
111 |
Q |
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| T |
53184690 |
aagctaagggaggtggtttattaaaatgtgtctaagaagattggaaataagtgtaccactgtgtttggtatgaaccttcgttggagggggttctgaaggg |
53184789 |
T |
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| Q |
112 |
tccatcatattcatagaccatagtgattatttaattcagtgattgatacaaatatctatatctgtgtgaaggatatcgttaatagtaacggagtccgagt |
211 |
Q |
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| T |
53184790 |
tccatcatatt-------catagtgattatttaattcagtgattgatacaa------atatctgtgtgaaggatatggttaatagtaacggagtccgagt |
53184876 |
T |
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