View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2703_low_72 (Length: 225)
Name: NF2703_low_72
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_72 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 28 - 199
Target Start/End: Original strand, 30859445 - 30859612
Alignment:
| Q |
28 |
ggatccagaccattcattatggatccaattaatgataacttcctcttatttatttacatgtgtccctagagtgacatggaccaaccacaagattaaggcc |
127 |
Q |
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| T |
30859445 |
ggatctagaccgttcatgatggatccaat----gataacttcctcttatttatttacatgtgtctctagagtgacatggatcaaccacaaggttaaggcc |
30859540 |
T |
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| Q |
128 |
tagctactatctcattggcctatataaggctaacatcaagaccttacaaggtatgcctctttataaccctag |
199 |
Q |
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| T |
30859541 |
taactgctatctcattggcctatataaggctaacatcaagaccttacaaggtatgcctctttataaccctag |
30859612 |
T |
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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 10006553 - 10006493
Alignment:
| Q |
121 |
taaggcctagctactatctcattggcctatataaggctaacatcaagaccttacaaggtat |
181 |
Q |
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| T |
10006553 |
taaggcttaactactatctccttggcctatataaggcgaacaccaagacctcacaaggtat |
10006493 |
T |
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