View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2703_low_9 (Length: 562)
Name: NF2703_low_9
Description: NF2703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2703_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 519
Target Start/End: Complemental strand, 40519766 - 40519265
Alignment:
| Q |
19 |
agttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgcagaggataatataacaaaacaaaaa-tcccaatacaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
40519766 |
agttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgcagaggataatataacaaaaaaaaaaatcccaatacaaa |
40519667 |
T |
|
| Q |
118 |
gtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40519666 |
gtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaat |
40519567 |
T |
|
| Q |
218 |
tgttgatgtggccatctggtatataactgtactagggtgtcattttgatttgcaggattttgagaatgaagaattggtgagaatacttccaaaatgtagc |
317 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40519566 |
tgttgatgtgaccatctggtatataaatgtaatagggtgtcattttgatttgcaggattttgagaatgaagaattggtgagattacttccaaaatgtagc |
40519467 |
T |
|
| Q |
318 |
cacatttttcatttagagtgcattgacaagtggctagtacaacaaggatcttgtcctatttgtagaacttacgttcctgaccatattaatttgtgaatag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40519466 |
cacatttttcatttagagtgcattgacaagtggctagtacaacaaggatcatgtcctatttgtagaacttacgttcctgaccatattaattcgtgaatag |
40519367 |
T |
|
| Q |
418 |
tttcgtatttgttgtaaaatagataggttaagc-aattgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgcca |
516 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
40519366 |
tttcgtatttgttgtaaaatagataggttaagcaaattgggaaatgataaatacagtgacaaaaattatc-aagaaaattttaagacagtgtatttgcca |
40519268 |
T |
|
| Q |
517 |
ata |
519 |
Q |
| |
|
||| |
|
|
| T |
40519267 |
ata |
40519265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 41781884 - 41782118
Alignment:
| Q |
19 |
agttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataatataacaaaacaaaaatcccaatacaaa |
117 |
Q |
| |
|
|||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||| |||||| | |||||||| |
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| T |
41781884 |
agttttgaactctaaattttttgacttttttctagcctcttaattgttaaaactaacaatgcaagaggctaatatga--aaataaaaattcgaatacaaa |
41781981 |
T |
|
| Q |
118 |
gtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaat |
217 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
41781982 |
gtcatcgcaatgttaa----tatgttaatttacataaaagtgtgaatgtgacatgttgaagttcttcatgagaccatgggaaataattgtcacattaaac |
41782077 |
T |
|
| Q |
218 |
tgttgatgtggccatctggtatataactgtactagggtgtc |
258 |
Q |
| |
|
||||||| ||||||| |||||||||| |||| ||||||||| |
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|
| T |
41782078 |
tgttgatatggccatttggtatataaatgtattagggtgtc |
41782118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 265 - 413
Target Start/End: Complemental strand, 40508463 - 40508315
Alignment:
| Q |
265 |
atttgcaggattttgagaatgaagaattggtgagaatacttccaaaatgtagccacatttttcatttagagtgcattgacaagtggctagtacaacaagg |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |||||||| |
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|
| T |
40508463 |
atttgcaggattttgagaatgaagaattggtcagaatacttccaaaatgtagccatatttttcatttagaatgcattgacaagtggctaatccaacaagg |
40508364 |
T |
|
| Q |
365 |
atcttgtcctatttgtagaacttacgttcctgaccatattaatttgtga |
413 |
Q |
| |
|
||| ||||| |||||||||||||| ||| ||| || ||||||| |||| |
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|
| T |
40508363 |
atcatgtcccatttgtagaacttatgttgttgatcacattaattcgtga |
40508315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 40510680 - 40510566
Alignment:
| Q |
134 |
ttaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaattgttgatgtggccatc |
233 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| | || |||| |||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
40510680 |
ttaatgtgttaaattacataaaagtgtgaatgtgacgtaccaaaattgtcgatgagaccatgggaaataattgtcacattaaattgttgatgtgaccatc |
40510581 |
T |
|
| Q |
234 |
tggtatataactgta |
248 |
Q |
| |
|
|||| |||| |||| |
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|
| T |
40510580 |
gggtagataagtgta |
40510566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 2e-78; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 18163796 - 18163560
Alignment:
| Q |
18 |
aagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgcagaggataatat-aacaaaacaaaaatcccaatacaa |
116 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| || ||| || |||| |
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|
| T |
18163796 |
aagttttgagctataaaatttttaacttttttctagcctcttagttgttaaaactaacaatgcagaggctaatatgaacaaaa---aagtcctaaaacaa |
18163700 |
T |
|
| Q |
117 |
agtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatggagaataattgtcacattaaa |
216 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
18163699 |
agtcatcaaaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgttgaagttgttcatgagaccatgaggaatcattgtcacattaaa |
18163604 |
T |
|
| Q |
217 |
ttgttgatgtggccatctggtatataactgtactagggtgtcat |
260 |
Q |
| |
|
||||||||||||||||||||||||||| | || ||||||||||| |
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|
| T |
18163603 |
ttgttgatgtggccatctggtatataaatttattagggtgtcat |
18163560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 14131306 - 14131248
Alignment:
| Q |
455 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgc |
514 |
Q |
| |
|
||||||||||||||||| ||||||| |||| || |||||||||||||||||| |||||| |
|
|
| T |
14131306 |
gggaaatgatagatacagtgacaaaatttatgaa-gaaaattttaagatagtgtatttgc |
14131248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 514
Target Start/End: Complemental strand, 31264908 - 31264850
Alignment:
| Q |
455 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgc |
514 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| |||||||||||||||| |||||| |
|
|
| T |
31264908 |
gggaaatgatagatacagtgacaaaatttatcaaa-caaattttaagatagtgtatttgc |
31264850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 512
Target Start/End: Complemental strand, 20143118 - 20143062
Alignment:
| Q |
455 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggattt |
512 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| |||||||||| ||||||||| |||| |
|
|
| T |
20143118 |
gggaaatgatagatacagtgacaaaatttatc-aagaaaatttcaagatagtgtattt |
20143062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 34713651 - 34713594
Alignment:
| Q |
455 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg |
513 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |||||||||||||||||| ||||| |
|
|
| T |
34713651 |
gggaaatgatagatacagtgacaaaatttatcaa-gaaaattttaagatagtgtatttg |
34713594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 454 - 513
Target Start/End: Complemental strand, 16528717 - 16528659
Alignment:
| Q |
454 |
tgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg |
513 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||| |||||||||||||||||| ||||| |
|
|
| T |
16528717 |
tgggaaatgatagatacagcgacaacatgtatcaa-gaaaattttaagatagtgtatttg |
16528659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 19663432 - 19663375
Alignment:
| Q |
455 |
gggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttg |
513 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||||||||| |||| ||||| |
|
|
| T |
19663432 |
gggaaatgatagatacagtgacaaaatttatc-aagaaaattttaagagagtgtatttg |
19663375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 521
Target Start/End: Complemental strand, 20125743 - 20125675
Alignment:
| Q |
452 |
attgggaaatgatagatacaccgacaaaaattatcaaagaaaattttaagatagtggatttgccaatacc |
521 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||||| |||| |||| |||||| |||||| |
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|
| T |
20125743 |
attgggaaatgatagatacaatgacaaattttatc-aagaaaatttgaagacagtgtatttgctaatacc |
20125675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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