View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2704_high_1 (Length: 351)
Name: NF2704_high_1
Description: NF2704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2704_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 4117301 - 4117482
Alignment:
| Q |
63 |
gtctattttatttggtcttgcaaacacaaaaatggtggacaacgatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctac |
162 |
Q |
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| T |
4117301 |
gtctatttgatttggtcttgcaaacacaaaaatggtggacaacaatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctac |
4117400 |
T |
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| Q |
163 |
agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacga |
244 |
Q |
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| T |
4117401 |
agttatattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcacttacga |
4117482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 4117218 - 4117270
Alignment:
| Q |
6 |
aaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattcaaa |
58 |
Q |
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| T |
4117218 |
aaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattcaaa |
4117270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 21156590 - 21156767
Alignment:
| Q |
63 |
gtctattttatttggtcttgcaaacacaaaaatggtggacaacgatgagttataacaaataatatgatttaaacaaaacacaaagcatagcaggtgctac |
162 |
Q |
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| T |
21156590 |
gtctatttgatttggtcttgcaaacacaaaaatggtggacaacaatgagttataacaagtaatatgatttaaacaaaacacaaagcatagcaggtgctac |
21156689 |
T |
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| Q |
163 |
agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcactt |
240 |
Q |
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| T |
21156690 |
agttgtattcaaacatccacaatccattatagtttcacattttcttagaatgccaatcagagcaaaagtatttcactt |
21156767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 21156510 - 21156560
Alignment:
| Q |
6 |
aaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattca |
56 |
Q |
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| T |
21156510 |
aaggtacagggggcagatttgagcaaaattttgtgaagattagtgcattca |
21156560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 272 - 319
Target Start/End: Original strand, 21156799 - 21156847
Alignment:
| Q |
272 |
acttttaacagtacacaaatcacaccaccgccacca-ccagcacgtcgc |
319 |
Q |
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| T |
21156799 |
acttttaacagtacacaaatcacaccaccgccaccatccagcacctcgc |
21156847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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